| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0023 |
|---|
| Symbol | |
|---|
| ID | 3627282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 28012 |
|---|
| End bp | 28968 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 637698915 |
|---|
| Product | UDP-N-acetylmuramate dehydrogenase |
|---|
| Protein accession | YP_303595 |
|---|
| Protein GI | 73667580 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0812] UDP-N-acetylmuramate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00179] UDP-N-acetylenolpyruvoylglucosamine reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000486691 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0088423 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAA TAAATAATTT GATTAATAAA AAAGTAGGAG ATATTTATTT AAAAGAACCT
CTTTCAAAAC ACAGTAGCTG GCGTATTGGT GGTCCCGCAG ACGTTTTAAT TGAACCATAT
AATATCAAAC AGATAATTGA AATTGTACAA TATGCTGATT TAATGAAAAT TCCCACGGTT
GTTATAGGGA ATGGAACAAA TTTACTTTTT TGTGATGAAG GGCTTCGTGG AATCATTATA
AAGTTGGGAA ATAATTTTTC TAGATATACT ATTAATGGTA AAAGGGTTTG CGCGGAAGCA
GGTATCTGGA CTCCAAAATT TGCAAAAATA TTATCAGATA ATGGTTTATC AGGCCTTGAA
CATGCTATTG GAATTCCAGG CACTCTTGGC GGACTTATTT TTATGAACGG AGGAAGCAGT
GGAAAATGCA TAGGAGACAT TGTCAAAAAA GTATGGGCTG TTGACAAGAA TTATGATTTA
ATATATTTAT CCCAAAAAGA ATGTGATTTT TCTTACAGAA AATCAGTATT TCAGGATTCA
GATTATATTA TTTGTAAAAT TGAGCTAGAA TGTGAACTTG GAGAAAAAGA ACGAATAAAG
TCCGAAATGA GAACTATACT AAATAACCGT AAGAACAAAT TTCCACTTAA TTATCCCAAT
TGTGGATCTG TTTTTTTAAG TAATCCTGTT GTGAACGACA CTTTTGCACC TCCTGGAAAG
TTAATTGAAG AAGCAGGTTT AAAAGGTTAT CAAATAGGTG GTGCTCAAAT TTCGGAAAAA
CATGCCAATT TTATAGTAAA TCTGGGAAAT GCTACGGCTA AAGATGTGAT TTCTATTGTC
CAATATATTC GAAAAGTTGT ATATCAACGT TACGGACTTT GTTTAGAAAG CGAAGTGAAG
TATGTAGGAG AGCTGGGAAG TCTCAGATCA TTGCATGAGA TTGGAAAAGT TGAATAA
|
|---|
| Protein sequence | MDKINNLINK KVGDIYLKEP LSKHSSWRIG GPADVLIEPY NIKQIIEIVQ YADLMKIPTV
VIGNGTNLLF CDEGLRGIII KLGNNFSRYT INGKRVCAEA GIWTPKFAKI LSDNGLSGLE
HAIGIPGTLG GLIFMNGGSS GKCIGDIVKK VWAVDKNYDL IYLSQKECDF SYRKSVFQDS
DYIICKIELE CELGEKERIK SEMRTILNNR KNKFPLNYPN CGSVFLSNPV VNDTFAPPGK
LIEEAGLKGY QIGGAQISEK HANFIVNLGN ATAKDVISIV QYIRKVVYQR YGLCLESEVK
YVGELGSLRS LHEIGKVE
|
|---|
| |