| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_A3188 |
|---|
| Symbol | |
|---|
| ID | 3612134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia eutropha JMP134 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007347 |
|---|
| Strand | - |
|---|
| Start bp | 3489090 |
|---|
| End bp | 3493337 |
|---|
| Gene Length | 4248 bp |
|---|
| Protein Length | 1415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637692605 |
|---|
| Product | DNA-directed RNA polymerase subunit beta' |
|---|
| Protein accession | YP_297392 |
|---|
| Protein GI | 73542872 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAT TGCTCGATCT CTTTAAGCAG GTACAGCAGG AAGAGCAGTT CGACGCGATC
AAGATCGGCC TGGCCTCGCC CGAGAAGATC CGTTCGTGGT CGTACGGTGA AGTCAAGAAG
CCGGAAACGA TCAACTACCG TACGTTCAAG CCGGAACGCG ACGGCCTGTT CTGCGCGAAG
ATCTTTGGCC CGATCAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTGAAGCAC
CGTGGCGTGA TCTGCGAAAA GTGCGGCGTT GAAGTGACGC TGGCCAAGGT GCGCCGCGAG
CGCATGGGCC ACATCGAACT GGCCGCGCCG ACCGCGCACA TCTGGTTCCT GAAGTCGCTG
CCGTCGCGTC TGGGCATGGT CCTGGACATG ACGCTGCGCG ACATCGAACG CGTGCTGTAC
TTCGAAGCAT TCGTGGTGCT CGAACCCGGC ATGACCCCGC TCAAGAAGAG CCAGATCATG
TCGGAAGACG ACTACCTCGC GAAGTGCGAC GAATACGGCG AGGGCGAGTT CGTCGCCATG
ATGGGTGCCG AGGGCATCCG TGAACTGCTG CGCGGCATCG ACATCGAGAA GCAGATCGAA
CAGATCCGCG CCGAGCTGCA AGCGACCGGT TCCGAAGCCA AGATCAAGAA GTTCGCCAAG
CGCCTGAAGG TGCTCGAGGC CTTCCAGCGT TCGGGCATCA AGCCCGAGTG GATGATTCTC
GAAGTGCTGC CGGTGCTGCC GCCCGAACTG CGTCCGCTGG TGCCGCTGGA CGGTGGCCGC
TTCGCGACCT CGGACCTGAA CGACCTGTAT CGCCGCGTCA TCAACCGTAA CAACCGTCTG
AAGCGCCTGC TGGAGCTGAA GGCGCCCGAG ATCATCGTGC GCAACGAAAA GCGCATGCTG
CAGGAAGCGG TTGACTCGCT GCTGGACAAC GGCCGTCGCG GCAAGGCGAT GACTGGTGCC
AACAAGCGTC CGCTGAAGTC CCTGGCCGAA ATGATCAAGG GCAAGGGCGG CCGTTTCCGT
CAGAACCTGC TGGGCAAGCG CGTCGACTAC TCGGGCCGTT CGGTCATCGT GGTGGGCCCG
ACGCTTAAGC TGCACCAGTG CGGCCTGCCC AAGCTGATGG CGCTCGAGCT GTTCAAGCCG
TTCATCTTCC ACAAGCTGGA AACGATGGGC ATCGCCACCA CGATCAAGGC GGCGAAGAAG
GAAGTCGAAA GCCAGACGCC GGTGGTGTGG GACATCCTCG AAGAGGTGAT CCGCGAGCAC
CCGGTGATGC TGAACCGTGC GCCGACGCTG CACCGCCTGG GTATCCAGGC GTTCGAGCCG
GTGCTGATCG AAGGCAAGGC CATCCAGTTG CACCCGCTCG TCTGCGCGGC GTTCAACGCC
GACTTCGACG GTGACCAGAT GGCTGTCCAC GTACCGCTGT CGCTGGAAGC GCAGATGGAA
GCCCGCACGC TGATGCTGGC CTCCAACAAC GTGCTGTTCC CGGCCAACGG CGACCCGTCG
ATCGTCCCGT CGCAAGACGT GGTGCTGGGT CTGTACTACA CGACCCGCGA CAAGATCAAC
GGCAAGGGCG AGGGCATGAC CTTTGCCGAC ATCAGCGAAG TGATCCGCGC CTACGAGAAC
AAGGAAGTCG AACTGGCTTC CCGCGTGAAC GTGCGTATCA CCGAGTATGA GCTGGTCGAC
AAGGATGCCG AAGGCGACGC GCGTTTCGCA CCCAAGATCA CGCTGCAGGC CACCACGGTC
GGCCGCGCGA TCCTGTCCGA GATCCTGCCG AAGGGCCTGC CGTTCTCGGT GCTGAACAAG
CCGCTCAAGA AGAAGGAAAT CTCGCGCCTG ATCAACACGG CGTTCCGCAA GTGCGGCCTG
CGCGAGACCG TGATCTTCGC CGACAAGCTG CTGCAGTCGG GCTTCCGCCT GGCAACGCGC
GCCGGTATCT CGATCGCGAT CGACGACATG CTGGTGCCGC CGGCCAAGGA GAAGATCATC
TCCGAGGCCT CGGCCAAGGT GAAGGAATAC GACAAGCAGT ACATGTCGGG TCTGGTGACG
GACCAGGAGC GTTACAACAA CGTCGTGGAC ATCTGGGGCG CCGCCGGCGA CCAGGTGGGC
AAGGCGATGA TGGAGCAGCT CCAGCACGAA GACGTGGTCG ACCGCAACGG CAACACCGTC
AAGCAAGAGT CGTTCAACTC CATCTACATG ATGGCCGACT CGGGCGCACG GGGTTCCGCT
GCGCAGATCC GCCAGCTGGC CGGTATGCGT GGCCTGATGG CCAAGCCGGA TGGCTCGATC
ATTGAAACGC CGATTACGGC GAACTTCCGT GAAGGCCTGA ACGTTCTGCA GTACTTCATC
TCGACCCACG GTGCACGTAA GGGTCTGGCT GATACGGCAC TGAAGACCGC GAACTCGGGT
TACCTGACCC GTCGTCTGGT CGACGTGACG CAGGATCTGG TCGTGGTGGA AGACGATTGC
GGCACCTCCA ACGGCGTGGC CATGAAGGCC CTGGTCGAAG GCGGTGAAGT GATCGAAGCC
CTGCGCGATC GTATTCTGGG CCGTGTGACG GTGGCTGACG TGGTGAACCC TGAAACCCAG
GAAACCGCGA TCGAAACCGG CACGCTGCTG GACGAAGACC TGGTCGACCT GATCGACGCC
CTCGGCGTCG ATGAAGTCAA GGTGCGCACG CCGCTGTCGT GCGACACGCG CTACGGCCTA
TGCGGCAAGT GCTATGGTCG CGACCTCGGC CGCGGCGTAC TGGTGAACTC CGGCGAGGCG
GTGGGCGTGA TCGCTGCCCA GTCGATCGGT GAGCCGGGCA CGCAGCTGAC CATGCGTACG
TTCCACATCG GTGGTGCGGC ATCGCGTGCG GCAGTGGCAT CGAGCGTGGA AGCCAAGGCG
ACCGGTACGG TCCGCTTCAC GGTGACCATG CGCTACGTGA CCAACGCCAA GGGCGAACTG
ATCGTGATCT CGCGTTCCGG CGAGGCGCTG ATCACCGACG ACCACGGCCG CGAGCGCGAG
CGCCACAAGA TCCCGTACGG CGCCACGCTG CTGGTGCAGG ACGGCCAGGC CATCAAGGCT
GGTACGCAGC TGGCCACGTG GGACGCGCTG ACGCGTCCGA TCGTGTCGGA GTACACCGGT
ACGACCAAGT TCGAGAACGT CGAAGAGGGC GTGACCGTCG CCAAGCAGAT GGACGAAGTC
ACCGGTCTGT CGACCCTCGT GGTGATCGAC GCCAAGCGCC GCACGGCTGC CACCAAGGGC
ATTCGCCCGC AGGTGAAGCT GCTCGACGCT AACGGGCAGG AAGTGAAGAT CCCGGGCACG
GACCACTCCG TGACCATCGG CTTCCAGGTC GGCGCGCTGA TTACCGTGAA GGACGGCCAG
CAGGTGCACG TCGGTGAAGT GCTTGCACGT ATCCCGACGG AATCGCAGAA GACTCGTGAC
ATTACCGGTG GTCTGCCGCG AGTGGCCGAG CTGTTCGAAG CGCGTTCGCC GAAGGACGCC
GCCGTGCTGG CGGAAGTCAC CGGCACGACT TCGTTCGGCA AGGACACGAA GGGCAAGCAG
CGCCTGGTCA TTACTGACCT GGACGGCAAT GCCCACGAGT TCCTGATCGC GAAGGAAAAG
CAGGTGCTGG TGCACGACGG CCAGGTGGTG AACAAGGGCG AAATGATCGT GGAAGGTCCG
GCGGATCCGC ACGACATCCT GCGCCTGAAG GGCATCGAGG AGCTGGCGCA CTACATCGTC
GACGAAGTGC AGGACGTGTA CCGTCTGCAG GGCGTGAAGA TCAACGACAA GCACATCGAA
GTGATTGTTC GTCAGATGCT GCGCCGCGTG CAGGTGGCTG ACGTGGGCGA CACCAAGTTC
ATCCCGGGTG AACAGGTGGA GCGCTCGGAA CTGCTTGACG AGAACGACCG CGTGATCGCC
GAAGGCAAGC GTCCGGCAAC CTACGAGAAC CTGCTGCTCG GTATTACCAA GGCGTCGCTG
TCGACCGACA GCTTCATCTC GGCGGCATCG TTCCAGGAAA CCACGCGCGT GCTGACCGAA
GCCGCGATCA TGGGCAAGAC CGACGACCTG CGTGGTCTGA AGGAAAACGT GATCGTCGGC
CGTCTGATCC CGGCCGGTAC CGGCTTGGCC TACCACCGTG CCCGCAAGGC ACGCGAGGCG
TCCGAGCGCG AACGCGCCCA GGCGATTGCC GACGAAGAGC AGTCGCTCTT CATCGAGCCG
CCGCCCGTGG TGCAGGCGAC GACCGAGGGC GAAGGCGACA ACGCCTGA
|
|---|
| Protein sequence | MKALLDLFKQ VQQEEQFDAI KIGLASPEKI RSWSYGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTLAKVRRE RMGHIELAAP TAHIWFLKSL
PSRLGMVLDM TLRDIERVLY FEAFVVLEPG MTPLKKSQIM SEDDYLAKCD EYGEGEFVAM
MGAEGIRELL RGIDIEKQIE QIRAELQATG SEAKIKKFAK RLKVLEAFQR SGIKPEWMIL
EVLPVLPPEL RPLVPLDGGR FATSDLNDLY RRVINRNNRL KRLLELKAPE IIVRNEKRML
QEAVDSLLDN GRRGKAMTGA NKRPLKSLAE MIKGKGGRFR QNLLGKRVDY SGRSVIVVGP
TLKLHQCGLP KLMALELFKP FIFHKLETMG IATTIKAAKK EVESQTPVVW DILEEVIREH
PVMLNRAPTL HRLGIQAFEP VLIEGKAIQL HPLVCAAFNA DFDGDQMAVH VPLSLEAQME
ARTLMLASNN VLFPANGDPS IVPSQDVVLG LYYTTRDKIN GKGEGMTFAD ISEVIRAYEN
KEVELASRVN VRITEYELVD KDAEGDARFA PKITLQATTV GRAILSEILP KGLPFSVLNK
PLKKKEISRL INTAFRKCGL RETVIFADKL LQSGFRLATR AGISIAIDDM LVPPAKEKII
SEASAKVKEY DKQYMSGLVT DQERYNNVVD IWGAAGDQVG KAMMEQLQHE DVVDRNGNTV
KQESFNSIYM MADSGARGSA AQIRQLAGMR GLMAKPDGSI IETPITANFR EGLNVLQYFI
STHGARKGLA DTALKTANSG YLTRRLVDVT QDLVVVEDDC GTSNGVAMKA LVEGGEVIEA
LRDRILGRVT VADVVNPETQ ETAIETGTLL DEDLVDLIDA LGVDEVKVRT PLSCDTRYGL
CGKCYGRDLG RGVLVNSGEA VGVIAAQSIG EPGTQLTMRT FHIGGAASRA AVASSVEAKA
TGTVRFTVTM RYVTNAKGEL IVISRSGEAL ITDDHGRERE RHKIPYGATL LVQDGQAIKA
GTQLATWDAL TRPIVSEYTG TTKFENVEEG VTVAKQMDEV TGLSTLVVID AKRRTAATKG
IRPQVKLLDA NGQEVKIPGT DHSVTIGFQV GALITVKDGQ QVHVGEVLAR IPTESQKTRD
ITGGLPRVAE LFEARSPKDA AVLAEVTGTT SFGKDTKGKQ RLVITDLDGN AHEFLIAKEK
QVLVHDGQVV NKGEMIVEGP ADPHDILRLK GIEELAHYIV DEVQDVYRLQ GVKINDKHIE
VIVRQMLRRV QVADVGDTKF IPGEQVERSE LLDENDRVIA EGKRPATYEN LLLGITKASL
STDSFISAAS FQETTRVLTE AAIMGKTDDL RGLKENVIVG RLIPAGTGLA YHRARKAREA
SERERAQAIA DEEQSLFIEP PPVVQATTEG EGDNA
|
|---|
| |