Gene Reut_A2810 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagReut_A2810 
SymbolsecD 
ID3612245 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia eutropha JMP134 
KingdomBacteria 
Replicon accessionNC_007347 
Strand
Start bp3080117 
End bp3081982 
Gene Length1866 bp 
Protein Length621 aa 
Translation table11 
GC content65% 
IMG OID637692221 
Productpreprotein translocase subunit SecD 
Protein accessionYP_297015 
Protein GI73542495 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCGTT ATCCGCTTTG GAAATATGTC GTGATCCTGG TGGCCCTGGC CATCGGCATC 
ATCTATACCC TGCCGAACTT CTTCGGCGAG GCGCCTGCCG TGCAGGTCTC CTCGGGAAAG
GCCACGGTCA AGGTGGACCT CTCCATGCAA AAGCATGTGG AGGAAATCCT GGCCCAGAAC
CAGCTCCAGC CTGACGGCGT GTTCTTCGAT GTATCGGGCC AGTCCGGCTC GGTCAAGGCG
CGCTTCCGTA CCACCGACGA CCAGCTCAAG GCCAAGGACG TCTTGTCGCG CGCGCTCAAT
CCGGACGCTA CCGATCCGAC TTACGTGGTC GCGCTGAACC TGCTCTCCGG CTCGCCGCGC
TGGCTGACCG CGATGCATGC GCTGCCAATG TACCTGGGCC TGGACCTGCG CGGCGGCGTG
CACTTCCTGC TGCAGGTCGA CATGAAGGGT GCCGTCGACA AGAAGCTCGA CAGCCTGGCG
GGCGATGCCC GCACCCTGCT GCGCGACAAG AACGTGCGCC ACGGCGGCAT CGACCGCGAC
GGCGACAAGC TGACCGTGCG CTTCAACAAT GCCGACGACG CCAACCGCGC GCGCGGTATC
CTGGCCGACA ACCTGCGCGA ACTCGCCTTC GCGATGGACG GCAACAACGT GGTCGGCACC
TTCACCGAAG CCGCCCGCAA GGCCGTGCAG GACGCCGCCG TCAAGCAGAA CATCACCACG
CTGCACAACC GCGTGAACGA ACTCGGCGTG GCCGAGCCGG TGATCCAGCA GCAAGGCGCC
GACCGCATCG TGGTCCAGCT GCCTGGCGTG CAGGACACCG CCAAGGCCAA GGACATCATC
GGCCGCACCG CCACGCTGGA AGCCCGCCTG GCCGATCCGG ACGCACCGCG CAACCCGCGC
GCAGGCGACC CGGTTCCGTT CGGCAGCGAG CTGTTCACGC AAGGCAACGG CGCCCCAGTC
GTGCTGAAGA AGCAAGTCAT CTTCACCGGC GACCGCATCG AAAGCGCATC GGCCGGCTTC
GACCAGAACC AGCGCCCGTC GGTCAACATC AAGCTCGACG CCCAGGGCGG CCGCGTGCTG
CGCGACGTCT CGCGCGAGAA CATCGGCAAG CCGATGGGCA TCGTGCTGTT CGAAAAGGGC
AAGGGCGAGG TGCTGACGGT CGCGACGATC CAGTCCGAAC TCGGCTCGAG CTTCCAGATC
ACCGGCTCCT ACTCGACCGA AGCGGCCAAC GACCTCGCGC TGCTGCTGCG CGCCGGCTCG
CTGGCCGCGC CGATGGAGAT CATCGAGGAA CGCACGATCG GCCCGTCGTT GGGCGCGGAC
AACATCCAGA AGGGCTTTGA CTCGGTGGCT TACGGCTTCG GTGCCATCAC CGTGTTCATG
GTGCTGTACT ACATGCTGTT CGGCGTGTTC TCGGTCGCGG CGCTAGGCAT CAACCTGCTG
CTGCTGATCG CTGTGCTGTC GATGCTGCAG GCCACGCTCA CGCTGCCAGG TATTGCCGCT
ATCGCGCTGG TGCTGGGTAT GGCCATCGAC GCGAACGTGC TGATCAACGA ACGTATCCGC
GAGGAACTAC GCGCGGGTGC TTCGCCGCAG ATGGCCATCG CCGTCGGCTT CGAACGCGCC
TGGGCCACCA TCCTGGACTC CAACGTCACC ACGCTGATCG CGGGCCTGGC GCTGCTGGCG
TTCGGCTCCG GCCCGGTGCG CGGCTTTGCC GTGGTGCACT GCCTGGGCAT CCTGACCTCG
ATGTTCTCGG CGGTGTTCTT CAACCGCGGC CTGGTCAACC TCTGGTACGG CCGCAAGAAG
AAGCTGCAGA GCGTGGCCAT CGGCCAGATC TGGAAACCGG GTGCGGACTC CCCGGTCGCC
AAGTAA
 
Protein sequence
MNRYPLWKYV VILVALAIGI IYTLPNFFGE APAVQVSSGK ATVKVDLSMQ KHVEEILAQN 
QLQPDGVFFD VSGQSGSVKA RFRTTDDQLK AKDVLSRALN PDATDPTYVV ALNLLSGSPR
WLTAMHALPM YLGLDLRGGV HFLLQVDMKG AVDKKLDSLA GDARTLLRDK NVRHGGIDRD
GDKLTVRFNN ADDANRARGI LADNLRELAF AMDGNNVVGT FTEAARKAVQ DAAVKQNITT
LHNRVNELGV AEPVIQQQGA DRIVVQLPGV QDTAKAKDII GRTATLEARL ADPDAPRNPR
AGDPVPFGSE LFTQGNGAPV VLKKQVIFTG DRIESASAGF DQNQRPSVNI KLDAQGGRVL
RDVSRENIGK PMGIVLFEKG KGEVLTVATI QSELGSSFQI TGSYSTEAAN DLALLLRAGS
LAAPMEIIEE RTIGPSLGAD NIQKGFDSVA YGFGAITVFM VLYYMLFGVF SVAALGINLL
LLIAVLSMLQ ATLTLPGIAA IALVLGMAID ANVLINERIR EELRAGASPQ MAIAVGFERA
WATILDSNVT TLIAGLALLA FGSGPVRGFA VVHCLGILTS MFSAVFFNRG LVNLWYGRKK
KLQSVAIGQI WKPGADSPVA K