| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_A1941 |
|---|
| Symbol | |
|---|
| ID | 3610923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia eutropha JMP134 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007347 |
|---|
| Strand | - |
|---|
| Start bp | 2128833 |
|---|
| End bp | 2130314 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637691332 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_296150 |
|---|
| Protein GI | 73541630 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.172476 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCGCG CTCCGCACGC GCCGGAAGAT TCCGGCGGCG GGTCGGGCGG ACCGACCCGG
GCGGCGCTGC GCGCGCGCTA CGGCGACCGC CTGCGCTGGC TGGTACTGCT CACGCTGATG
CTTGGGACGA TGTCGTCCAT CGTCTCTTCC ACCATCATCA ACGTGGCTAT TCCCGACCTG
AGCCGCCATT TCGTGCTGGG ACAGGAACGC GCACAATGGG TCGCGGCCAG TTTCATGATC
GCCATGACGC TGGCGATGCT GCTAACCCCG TGGCTGCTCA ACCGGTACGG CCTGCGGCGG
ACGTTTCTGG GCGCGCTGGC GCTGCTGGGC GTAGGCGGGG CGGTAGGCGG GCTCTCGCCG
ACCTACGGCG TGATGATCGC GATGCGCGTG GCGGAAGGCG CCGCCGCGGG CATCATGCAG
CCGCTGCCCA ACATCCTCGT ACTGCGTGTC TTCGACGAAC GCGAGCAGGG CAAGGCCATG
AGCCTGTTCG GTTTCGGCGT GGTGCTGGCG CCCGCGCTGG GTCCGAGTCT GGGCGGTTTC
CTTGTCGAGG CCTTCGGCTG GCGCTCGATC TTCTTTGTGG TGGTTCCATT GACGCTCCTC
GGCGCAGTCA TGGCGCGTCG CTTCATGGCC GTCGACTCGA TCATGATGGG CGAACGCAAG
CCGCTGGACT GGCGCGGGCT AGCGCTGGCC GGTGTCGCCA CGGTCTGCCT GTTGAACGGG
CTCGTGGAAA TGCGCGAAAG CGTGGGCGCC GGGCTGGCGC TGGCCGGTCT GGGCGTGGTG
CTGATCGTGG TGTTCGTGAT GTGGCAGCTG CGCGCGGCCG ATCCGCTGAT GGACATGCGG
CTCTACAGCT ACCGCCAGTT CTCGGCGGGC GCGGTGGTCG CGTTCATCTA CGGCGCCGGC
CTGTTCGGTT CGACCTACCT GCTGCCGGTG TACATGCAGA TGGCGCTGAG CTATACGCCG
TCGCGCGCGG GCCTGGTGCT GCTGCCGGCC GGCATTGCGC TTGGGATTAC GATCGCTGTG
GCGGGACGCT TCACGCATCG CGTATCGCCG CACTTGCAGG TGTCGTTGGG ACTGGCGCTG
CTGGCGCTGT CGTTCCTGCT GATGGCGACG GGTTCGCCGT CCACGCCGTA CCTGGTGCTG
GTGGCGCTGG CGGTGCTGGG CCGAATCGGG CTCGGTTGCA TCCTGCCGTC GCTGACGCTG
GGCTCCATGC GCGGTGTGGA CTTCTCGCTG ATTGCGCAAG GATCTAGCTG CATCAACTTC
GTGCGCCAGC TTGGCGGGGC GATCGGCGTC AGCCTGGCCG GCGTGGGCCT GCAATGGCGG
CTGAACCAGC ACGGCGTGGC GCTGGGGCAG GGCGGCGACG TGCTGGCGCA AGCCGCGCGT
ATCCGCGCGT TCGATGAAAC CTTCCTGGCC GTAGGCCTGG TGATCGCCAC GGCCATTCTT
GCGTCCTGGC GCATCCGGCC GAAGCCGGTG CCAGGAGCTT GA
|
|---|
| Protein sequence | MSRAPHAPED SGGGSGGPTR AALRARYGDR LRWLVLLTLM LGTMSSIVSS TIINVAIPDL
SRHFVLGQER AQWVAASFMI AMTLAMLLTP WLLNRYGLRR TFLGALALLG VGGAVGGLSP
TYGVMIAMRV AEGAAAGIMQ PLPNILVLRV FDEREQGKAM SLFGFGVVLA PALGPSLGGF
LVEAFGWRSI FFVVVPLTLL GAVMARRFMA VDSIMMGERK PLDWRGLALA GVATVCLLNG
LVEMRESVGA GLALAGLGVV LIVVFVMWQL RAADPLMDMR LYSYRQFSAG AVVAFIYGAG
LFGSTYLLPV YMQMALSYTP SRAGLVLLPA GIALGITIAV AGRFTHRVSP HLQVSLGLAL
LALSFLLMAT GSPSTPYLVL VALAVLGRIG LGCILPSLTL GSMRGVDFSL IAQGSSCINF
VRQLGGAIGV SLAGVGLQWR LNQHGVALGQ GGDVLAQAAR IRAFDETFLA VGLVIATAIL
ASWRIRPKPV PGA
|
|---|
| |