| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_A1624 |
|---|
| Symbol | |
|---|
| ID | 3609007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia eutropha JMP134 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007347 |
|---|
| Strand | - |
|---|
| Start bp | 1745718 |
|---|
| End bp | 1747376 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637691012 |
|---|
| Product | pyridoxal-dependent decarboxylase |
|---|
| Protein accession | YP_295834 |
|---|
| Protein GI | 73541314 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCGG ACACCTCTCT CGAAAAGACC TCCCAAAGCA CGGACGGGGG CGACGACTGC
CCCTTGCGCT GGTTCGATGC GGATCTCGGT GCGTTCGAAT CGCTCGAGCG GCTGATCGCC
GAGCATCCGG CGGATTTTTT CGCCGGCAAG AGCTTTGAAC CGGTAGGCGC TTGCCACACA
CGCGAGGCGG TGTTCGCGTC GGTAGAACTG CCAGAGACGC CGACATCGCC GCAAGCGCAT
GCCGATCATC TGCTCCATGA CGTGTTTCGG CACGTGATGC CCGTGGCATC GCCGACCTTC
GTCGGACACA TGACGTCGTC GCTGCCATCG TTCATGCCTT CTCTGGCCAA GGTGGTCGCT
GCGCTGAATC AGAACGTCGT GAAGCTGGAG ACGTCGGGTG CGCTGACCGG GCTCGAGCGC
CAGGTCGTCG GCATGCTGCA CAAGCTGGTG TTTAGCCAGG ACAGTGCGTT CTATGGCAGA
TGGCTGCACG ATGCCGATCA CGCGCTTGGC GCCATCTGTT CTGGTGGCAC GGTCGCCAAC
CTCACCGCCT TATGGGCGAG CCGCAACAAG CTGCTGGGCG CGCGTGATGG CTTCGCCGGC
ATCCATCGTG CCGGCATGGT GGCAGCGCTG CGCCATTATG GCTATGACGG CCTCGCGATC
GTCGTCTCGG AGCGCGGCCA CTACTCGTTG GGCAAGGCAG CCGATGTGCT TGGCATCGGG
CGCGACAATC TCGTGCCTGT CGAGGTCGAT GCGGAAGGCC GCATGCGCAT CGACTTGCTG
CGCGACACCA TGCGTGACCT GCAGCAGCGC AACATCCGGC CGATGGCGAT CGTCGGCATA
GCGGGGACCA CCGAGACAGG CTCGGTCGAT CCGCTGGATG CGATTGCGGA TATTGCGCAG
GAGGCCGGCT GCCATTTCCA CGTGGATGCA GCATGGGGCG GCGCAACGCT GCTGTCGGAG
CGCGAGCGCT GGCGCTTCGC GGGCATCGAG CGTGCCGATT CCGTCGTCAT CGATGCGCAC
AAGCAGTTCT ACGTGCCGAT GGGCGCCGGC ATGGTGCTGT TCCGCAGCCC CGCGTGGACG
CAGGAAATCA TCCAGCATGC GAACTACATC GTGCGCAAGG GCTCGGTGGA CCTGGGCCGT
CATACGCTCG AAGGCTCGCG TGGCGCGGCG GCTGTCATGC TTTACGCGAA CCTGCATCTG
CTCGGTCGCA AGGGTTTGGC GCAGTTGATC GACCGCAGCA TCGACAACGC CCACTACTTT
GCTTCGCTGA TTGCGCAGCA GCCGGATTTC GAGCTCGTCA GCCATCCGCA GCTTTGCCTC
CTGACCTATC GTTACTTGCC TGAGACCGTG CGCGCAGCAC TGGCAACGGC TTCGGAGGAC
AAGCGCGAGA AGATCCTGGA TGCGCTCGAT GCGTTGACCG TCAGCATCCA GGAAATGCAG
CGCGATGCCG GACGCTCGTT CGTGTCGCGC ACGCAGTTGA CGTCAACACA GTTTGCAGGG
CGCCCGATTG CGGTTTTCCG CGTGGTGCTG GCCAATCCGG ATACAACGCA TGCCATCCTG
CAGGACATCC TTGACGAACA GCGCATGCTG GCGGCGGCCA GCCCATGCAT GGCTGCGCTG
ATGGCTCTGG TGGAAGCCAG CGGCAGGCTT CAGCGCTGA
|
|---|
| Protein sequence | MTPDTSLEKT SQSTDGGDDC PLRWFDADLG AFESLERLIA EHPADFFAGK SFEPVGACHT
REAVFASVEL PETPTSPQAH ADHLLHDVFR HVMPVASPTF VGHMTSSLPS FMPSLAKVVA
ALNQNVVKLE TSGALTGLER QVVGMLHKLV FSQDSAFYGR WLHDADHALG AICSGGTVAN
LTALWASRNK LLGARDGFAG IHRAGMVAAL RHYGYDGLAI VVSERGHYSL GKAADVLGIG
RDNLVPVEVD AEGRMRIDLL RDTMRDLQQR NIRPMAIVGI AGTTETGSVD PLDAIADIAQ
EAGCHFHVDA AWGGATLLSE RERWRFAGIE RADSVVIDAH KQFYVPMGAG MVLFRSPAWT
QEIIQHANYI VRKGSVDLGR HTLEGSRGAA AVMLYANLHL LGRKGLAQLI DRSIDNAHYF
ASLIAQQPDF ELVSHPQLCL LTYRYLPETV RAALATASED KREKILDALD ALTVSIQEMQ
RDAGRSFVSR TQLTSTQFAG RPIAVFRVVL ANPDTTHAIL QDILDEQRML AAASPCMAAL
MALVEASGRL QR
|
|---|
| |