| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_A0888 |
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| Symbol | |
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| ID | 3611994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia eutropha JMP134 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007347 |
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| Strand | + |
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| Start bp | 967430 |
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| End bp | 969781 |
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| Gene Length | 2352 bp |
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| Protein Length | 783 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637690278 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_295111 |
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| Protein GI | 73540591 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAAGG CCTCGACTTC GGCACGCGAG AGCGGCAAGA GCGCCAGTAC GAGCGGCAAG
GTCGCCGCAT CTGCACCAGT GAAAGGCAAG AGTATCACCG TGGCGAAACA GCAGAATACC
GAAGTCGAAA GCAAGCAGAC GGCAGCAGCA GCCGGTGCCA AGAGCGCAAG CGCCAAGGCA
GGTGCGACTG CGCCGGCACC CAAGGCACGC GCCGCTTCTC CCGCCGCCGT TGCATCCGAG
CGTCCCGCAG CGCCGGCAGT CAAGCCGGAA CCGAAAAAGC GTGGCCGCAA GCCAAAGGCG
GAGTTGCAGC GCGACGAGAG CACGACTGAC GACGTGACTG AAGAGTTCTT CGAGAACGAC
ACGCCCGCAG CGGCGCCTGC CGCCGCGCCG AAGACCGAAA AGCAGAAGGC CAAGGACCGC
AAGGCCAAGG AGAAGGCGCT GCTGAAGGAG TTCGCCTCGA CCCAGCAGGG CACGGAGGAA
GAGCTCGAGC TGCGTCGACA GAAGCTCAAG GCGCTGATCA AGCTGGGCAA GTCGCGCGGC
TACCTGACCT ACGCCGAAAT CAACGATCAC CTGCCGGACG ACATGGTCGA TTCGGAGACG
ATCGACACGC TCGTCGCCAC CCTGAACGAC ATCGGCATTG CCGTGTACGA ACAGGCGCCG
GACGCCGAAA CGCTGCTGCT CAACGACAAC GCGCCGTCCG CCACCAGCGA GGAAGAGGCT
GAGGAAGAAG CCGAAGCCGC GCTGTCGACC GTCGACTCCG AATTCGGCCG CACCACCGAC
CCCGTGCGTA TGTACATGCG CGAAATGGGC ACGGTGGAGC TGCTCACGCG CGAAGGCGAA
ATCGTGATCG CCAAGCGTAT CGAGGCGGGC CTGAAGGACA TGGTGATGGC CATTTCCGCG
TGCCCGGTCA CGATCTCGGA AATTCTGGCC AACGCCGAGC GCGTCGCCAG CGACGAAATC
AAGATCGACG AATTCGTTGA TGGCCTGATC GACCCGAACG CCGATGAAAT GGCCCAGGAA
GCCGCGGGTG CTTCGGCCGC GGATGAAGAA GACCTGGAAT CCGACGAGGA CGAAGAGTCC
GACGAGGACG AGGAAGACGA CGACGCTGCC GGCGCCGGTG CCTCGGCACG CCAGCTCGAA
GAGCTGAAGC TGTCCGCACT CGAGAAATTC CGCGTCATCG CCGAGCAGTT CGACAAGATG
CGCCGCGCGT TCGAGAAGGA AGGCTATAAC TCCAAGCCTT ACGTGAAGGC GCAGGAAGCC
ATCCAGGCCG AGCTGATGGG CATCCGCTTT ACCGCGCGCA GCGTCGAGCG CCTGTGCGAC
ACGCTGCGCG GCCAGGTCGA CGAAGTGCGC AAGCTCGAAC GCTCGATCCT GAATATCGTG
GTCGACAAAT GCGGCATGCC GCGCTCGGAT TTTGTCGCGC GCTTCCCGGG CAACGAAACC
AACCTCGACT GGGTTGGCAC CATCGTGGCC GATGGCAAGC CCTACAGCAC CATCGTCGAA
CGCAACGTGC CGGCCGTGCA TGAACTGCAG CAGAAGCTGA TTGACCTGCA ATCGCGCGTG
GTGCTGCCGC TCAAGGAACT CAAGGGCGTC AACCGCAAGA TGGCCGAGGG CGAAAAGCGC
GCCCGCGAAG CCAAGCGCGA GATGACCGAG GCCAACCTGC GCCTGGTGAT CTCGATCGCC
AAGAAGTACA CCAACCGCGG CCTGCAGTTC CTCGATCTGA TCCAGGAAGG CAACATCGGC
CTGATGAAGG CGGTGGACAA GTTCGAATAC CGCCGCGGCT ACAAGTTCTC GACGTATGCC
ACGTGGTGGA TCCGCCAGGC CATCACGCGT TCGATCGCCG ACCAGGCGCG CACCATCCGT
ATCCCGGTGC ACATGATCGA GACGATCAAC AAGATGAACC GCATCTCGCG CCAGATCCTG
CAGGAAACCG GCAACGAGCC GGATCCGGCA ACGCTGGCCG AGAAGATGGA GATGCCGGAA
GACAAGATCC GCAAGATCAT GAAGATCGCG AAGGAACCGA TCTCCATGGA AACGCCGATC
GGTGACGACG ACGACTCCCA TCTGGGCGAC TTTATCGAGG ACACCAACAC GCTGGCCCCC
GCAGAAGCGG CCCTGCACGG CTCCATGCGC GACGTCGTCA AGGACGTGCT GGACTCGCTG
ACGCCGCGCG AAGCCAAGGT GCTGCGCATG CGCTTCGGCA TCGAAATGAG CACCGATCAC
ACGCTGGAAG AGGTCGGCAA GCAGTTCGAC GTCACCCGCG AACGTATCCG CCAGATCGAA
GCCAAGGCAT TGCGAAAGCT GCGCCACCCG AGCCGCTCTG ATAAGCTCAA GAGTTTCCTG
GAAGGCAACT AA
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| Protein sequence | MTKASTSARE SGKSASTSGK VAASAPVKGK SITVAKQQNT EVESKQTAAA AGAKSASAKA
GATAPAPKAR AASPAAVASE RPAAPAVKPE PKKRGRKPKA ELQRDESTTD DVTEEFFEND
TPAAAPAAAP KTEKQKAKDR KAKEKALLKE FASTQQGTEE ELELRRQKLK ALIKLGKSRG
YLTYAEINDH LPDDMVDSET IDTLVATLND IGIAVYEQAP DAETLLLNDN APSATSEEEA
EEEAEAALST VDSEFGRTTD PVRMYMREMG TVELLTREGE IVIAKRIEAG LKDMVMAISA
CPVTISEILA NAERVASDEI KIDEFVDGLI DPNADEMAQE AAGASAADEE DLESDEDEES
DEDEEDDDAA GAGASARQLE ELKLSALEKF RVIAEQFDKM RRAFEKEGYN SKPYVKAQEA
IQAELMGIRF TARSVERLCD TLRGQVDEVR KLERSILNIV VDKCGMPRSD FVARFPGNET
NLDWVGTIVA DGKPYSTIVE RNVPAVHELQ QKLIDLQSRV VLPLKELKGV NRKMAEGEKR
AREAKREMTE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY RRGYKFSTYA
TWWIRQAITR SIADQARTIR IPVHMIETIN KMNRISRQIL QETGNEPDPA TLAEKMEMPE
DKIRKIMKIA KEPISMETPI GDDDDSHLGD FIEDTNTLAP AEAALHGSMR DVVKDVLDSL
TPREAKVLRM RFGIEMSTDH TLEEVGKQFD VTRERIRQIE AKALRKLRHP SRSDKLKSFL
EGN
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