| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_A0572 |
|---|
| Symbol | |
|---|
| ID | 3610835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia eutropha JMP134 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007347 |
|---|
| Strand | - |
|---|
| Start bp | 624031 |
|---|
| End bp | 625527 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637689963 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_294798 |
|---|
| Protein GI | 73540278 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0544292 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAACC CCGAACAAGG CCAACAACAA CCTATCCCGC CGTCCCGCCC GCCGGAGGTC
CCCGGCCCGG CCGGTTCGCC ACGGCGCAAG CTGATCGCCG CGGCCCTCGT CGTACTGCTT
GCCGGCGGCG GCTGGTACTG GTACAGCCAT CGCGGCGCCG GTGCGGACGC ACAGGGGACA
CAGGGCGCGC GCGGGCCCGG CGGGCCGGGG GGCGCAAGTG GCCCGGGCGC CGGTGGCCGC
GGCGGGCCGG GCGGCCCCGG TGCCCCGCGC TCACCGGTGG TCGTGTCCAC GGTCGCGCAG
CGCGACATGG ACGTGACCCT GAACGGCCTG GGCAACGTCA CACCCGTGTC CAACGTCACC
GTGCGCGCCC AGGTGTCGGG GCCGCTGCTC AAGGTGCTGT TCAAGGAAGG CCAGATGGTC
AAGGCCGGCG ACGTGCTCGC GGAAATCGAC CCGCGTCCGT TCCAGGCCGC GTTCGACCAG
GCCGTGGGCC AGCTCGCGCG CGACCAGGCG CTGCTGCAGA ACGCACGGCT GGACCAGAAG
CGCTACCGCA CGCTGCTGCA GCAGGATTCG ATTTCCAGCC AGCAGGTCGA TACGCAGGAT
GCGCTGGTGC GCCAGTATGA AGGCGTGGTC AAGACCGACC AGGGCAATGT GGACAATGCG
CGGTTGCAGC TCGGCTACAC CAAGGTCGTG GCGCCGGTGT CGGGCCGCAT CGGCCTGCGC
CAGGTGGATC CCGGCAATAT CGTCAATACG TCGGATACCA ACGGCATTGC GCTGATCACG
CAAATCCAGC CGATTGCCGT GCTCTACACC ATTCCCGAGG ACAGCCTGCC CGCTGTGCTG
AAAAAGCTCA ATTCGGGCGA GAAAATGCCG GTGCAGGCCT GGGACCGCCA GATGCGCAAC
CAGCTTGGCG ACGGCACGCT GCTGACCACC GACAACCAGA TCGACACCAC CACCGGCACG
GTCAAGATGA AGGCCATCTT CCCGAACGCC GACGGCATGC TGTTCCCTAA CCAGTTCGTC
AATGTGCGCA CGCGCGTGGA CACGCTCAAG GACGCGACCG TGATCCCGGT CGCGGCCGTG
CAGCGCGGAC AGCAAGGCAC CTTCGTCTAC GTCGTCGACG ACAGCAGCAA GGTCAGGGTG
CAGGTCGTCA CGCTCGGTCC CAGCGACGGC AACCGTACCG CTGTGCTCAA GGGCGTGGAG
CCCGGCCAGC GCGTGGTAGT GGACGGCGCC GATCGCCTCA AGGAAGGCAT GACCGTGGAA
GCTGTGGACC CGGCCGCCCG CGCGGCCCAA CTCGTGCCGG CCAGCCAGCC GCGCGGGCGC
GGACGCCGCC GCGATGGCGG CAGCTGGGGC GGCGCCAGCG GCGCTCAAGG AGAACGTGGA
GAGCGCGGCG CCAGCGCGCC GCAGGGTGAA CATCGCCGCC AGCGCGAAGG TGCCGGGTCC
GGCGCCGATG CGAGCGGCGC CGCGGCCGAG GCTCCTGCTC CGCGCCGCCA GCCGTAA
|
|---|
| Protein sequence | MPNPEQGQQQ PIPPSRPPEV PGPAGSPRRK LIAAALVVLL AGGGWYWYSH RGAGADAQGT
QGARGPGGPG GASGPGAGGR GGPGGPGAPR SPVVVSTVAQ RDMDVTLNGL GNVTPVSNVT
VRAQVSGPLL KVLFKEGQMV KAGDVLAEID PRPFQAAFDQ AVGQLARDQA LLQNARLDQK
RYRTLLQQDS ISSQQVDTQD ALVRQYEGVV KTDQGNVDNA RLQLGYTKVV APVSGRIGLR
QVDPGNIVNT SDTNGIALIT QIQPIAVLYT IPEDSLPAVL KKLNSGEKMP VQAWDRQMRN
QLGDGTLLTT DNQIDTTTGT VKMKAIFPNA DGMLFPNQFV NVRTRVDTLK DATVIPVAAV
QRGQQGTFVY VVDDSSKVRV QVVTLGPSDG NRTAVLKGVE PGQRVVVDGA DRLKEGMTVE
AVDPAARAAQ LVPASQPRGR GRRRDGGSWG GASGAQGERG ERGASAPQGE HRRQREGAGS
GADASGAAAE APAPRRQP
|
|---|
| |