| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMN2A_1719 |
|---|
| Symbol | |
|---|
| ID | 3607127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. NATL2A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007335 |
|---|
| Strand | + |
|---|
| Start bp | 387664 |
|---|
| End bp | 389415 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 637688608 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_292910 |
|---|
| Protein GI | 72383555 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCCA GTGATAAAGA TCAAGGGAAA AAGAATATAC CTAAAATCCA AACATTTACT
GTTCCATTTG CTTTAGGTGA AATCCAAGAA AATATAACTA TTACTACTAA TACTCCCGCT
AAACCATCTA AACCATCTAA ACCATCTAAA CCATCTAAAC CATCTAAACC ATCTAAAGAA
CAAATAATTA ATCAAGCAAT TCAGTTTCAT CTACGAGGTA ATATTCCAGA AGCAATAAAA
TATTATGAAT ATTTAATACA GCAAGGTTTC AAGAACCACA ATGTTTTTTC TAATTATGGA
CTCATATTGA AAGATCTAGG AAAATTAAAA GAAGCAGAAA TATCAACACG CAAAGCAATT
GAACTCAATC CCAATTACGC AATAGCATTT TCAAATCTGG GAACGATATT GAAAGATCTT
GGAAACTTAC AAGAAGCAGA AGTATCCACT CGTAAAGCAA TTGAACTCAA TACTAATTAC
GCAGAGGCAT ATTTAAATCT GGGAACGATA TTGAAAGATC TTGGAAACTT AAAAGAAGCA
GAAATATCAA CACGCAAAGC AATTGAACTC AATCCCAATT CCGCAATGGC ATTTTCAAAT
CTGGGAACCA TATTTATAGA TCTTGGAAAC TTACAAGAAG CAGAAGTATC CACTCGTAAA
GCAATTGAAC TCGATCCCAA TTACGCAGAG GCATATTCAA ATCTAGGAAA TATATTGAAA
GATCTTGGCA ACTTACAAGA AGCTGAATTA TCACTCCGCA AAGCAATTGA AATCAATCCT
GATTTCGCAG AGGCATATTC CAATCTTTCA TTATTAGAAC TTCTAAAAGG AAATTATGAA
TCTGGTTTAG AAAACTATGA GTTTAGATCT CAAACCAAAA AACCTGCTAT TACTCACGCA
AATATAAAAC TAAAAAAAAT CAATAATGAA AAATTAGACA AAGGAAACAA ACTTTTAGTT
GTTAGCGAAC AAGGTTTAGG CGATACGCTT CAATATATGC GATACATACC TTACCTACGA
AAAAAAGATT TTGATATTTC TTTTTGTGCT CAAACAAAAC TACATTCATT GATCCAATCA
TCATGTATTG ATCTAAATCC ATTAACTCCA GAACAAGCAA GCTTAGTGTC AGAAGGTGAA
TGGGTTCCAT TATTATCTTT ACCTAAATAT TTAAAAGTAA GGCCAGAAAA TCCAATCGTT
TCTGAGCCAT ATATTTCATC AAATGATGAA TTAAATAAAA AGTGGAAAGA CATTCTATCT
AAAGAGAAAA GACCCATCAT TGGTATTAAT TGGCAAGGAA GTCCAGAAAT AGAAAAAAGC
GTTTATCAAG GACGTTCAAT TCCTTTAGAC ATATTCTCAA TCCTTCTTAA AGAAAATGAT
ATAACAATGC TTTCTTTACA AAAAGGATTT GGTTCAGAAC AATTAAATGA TTGTTCATTT
AAAAATGAGT TTGTTGAATG CCAACCACAA ATTGATGCGA CTTGGGATTT TCTTGAAAAT
GCTGCCATTA TTGAAAACTG TGATTTGATT ATTACTTGTG ATACTTCAAT TGCTCACTTA
GCTGGAGGAA TGGGAAAGAA AGTTTGGTTA CTGCTAAAAG ATATTCCTTT TTGGACTTGG
GGACTTGAAA GGGAGAATAC ATTTTGGTAT CCATCGATGA AATTATTTCG ACAAAAAGAG
CGACATAATT GGCAAGAGGT TATGGATAGA GTATCAATCG CAATTACAAA AGAAATGAAA
AAAAATGACT AA
|
|---|
| Protein sequence | MESSDKDQGK KNIPKIQTFT VPFALGEIQE NITITTNTPA KPSKPSKPSK PSKPSKPSKE
QIINQAIQFH LRGNIPEAIK YYEYLIQQGF KNHNVFSNYG LILKDLGKLK EAEISTRKAI
ELNPNYAIAF SNLGTILKDL GNLQEAEVST RKAIELNTNY AEAYLNLGTI LKDLGNLKEA
EISTRKAIEL NPNSAMAFSN LGTIFIDLGN LQEAEVSTRK AIELDPNYAE AYSNLGNILK
DLGNLQEAEL SLRKAIEINP DFAEAYSNLS LLELLKGNYE SGLENYEFRS QTKKPAITHA
NIKLKKINNE KLDKGNKLLV VSEQGLGDTL QYMRYIPYLR KKDFDISFCA QTKLHSLIQS
SCIDLNPLTP EQASLVSEGE WVPLLSLPKY LKVRPENPIV SEPYISSNDE LNKKWKDILS
KEKRPIIGIN WQGSPEIEKS VYQGRSIPLD IFSILLKEND ITMLSLQKGF GSEQLNDCSF
KNEFVECQPQ IDATWDFLEN AAIIENCDLI ITCDTSIAHL AGGMGKKVWL LLKDIPFWTW
GLERENTFWY PSMKLFRQKE RHNWQEVMDR VSIAITKEMK KND
|
|---|
| |