| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMN2A_1232 |
|---|
| Symbol | |
|---|
| ID | 3606625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. NATL2A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007335 |
|---|
| Strand | + |
|---|
| Start bp | 1729519 |
|---|
| End bp | 1731771 |
|---|
| Gene Length | 2253 bp |
|---|
| Protein Length | 750 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 637688107 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_292425 |
|---|
| Protein GI | 72383070 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.967237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAAA TTTTTAAGCA ATCTCAGGAC AAGAAGAAAA TCAATGAAGT TAAAACCTTC
TCAGTTCCAT TTGCTTTAGA AGAAAACAAA GACAATATTA CCATTTATAC TAATACTACC
TCAGAAACTT CGAAGCAAAA AATCATTAAT CAAGCAATCA AGTTTCATTT ACAAGGTAAT
ATTTTAGAAG CAAAAAAATA TTATCAATAT ATAATAGATC AAGGATTTAA TGATCACAGA
GTCTTTGCTA ATTATGGAGC AATTTTAAGA GATCTTGGCA AATTAAAAGA TGCAGTATTA
GCAGTTCGTG AAGCTATTAA AATTAATCCT AATTTTGCTG AGGCATATTG CAACATGGGA
ATAATATTTA AAGACCTTGG TAATTTACAA GACGCAGAAT TTTATACTCG CAAAGCAATT
CAAATTAATC CAGATAGTGC ATTGGCTTAC TCGAATCTGG GAATCATATT GAAAGACCTT
GGTAATTTAC AAGACGCAGA ATTTTATACT CGCAAAGCAA TTCAAATTAA TCCTAATTTG
CCAGAGGCTT ATTCCAATCT GGGAATAATA TTGAAAGACC TTGGTAATTT ACAAGACGCA
GAATTCTCAT ACCGCAAAGC AATTCAAATT AATCCTAATT TGCCAGAGGC TTATTTCAAT
CTTGGAATCA TATTGAAAGA CCTTGGTAAT TTACAAGACG CAGAATTCTC ATACCGCAAA
GCAATTCAAA TCAAACCTAA ATTGGCAAAT TCCCATAATA ATCTAGGAAT AATCTTGAAA
GATCTTGGTA AGTTACAAGA CGCAGAGTTG TCATACCGCA AAGCAATTCA AATTAATCCT
GATTACGCAG AAGCTTATTC CAATCTAGGA AGCACATTAA AAGAGCAAGG TAATTTTACT
GATGCTATAA ATCAATTCAA GCATGCACTA AAATTGAACA ATGAATTAAC ATCAGCTAAG
GCTGGTTTAA TGTCTACTAA GGGTAATATA TGCGATTGGA GTGATGAAAG AACTCGTAAT
ATATGGCTTA AATCACTTGG TATTAAAGGA AAAGCTATTA ATCCATGGGG ATTACTTTCA
TTAGAAAATA ATCCTTTAAA TCATTTAAAA AGATCTAAGA AATTTTATAA AGAAAAATAT
ATACGACCAA CTCAATATAT TAAACCTTCC CCAAAAAGTT TAATTCATAT AGGTTATTTC
TCTGCTGATT TCCTGAATCA TCCTGTAATG CAACTAATTG CTCCTCTACT TGAGCTACAT
GATAAATATA GGTTTAAAAT ATATTTATAC TCATTTGTGC CAAAAGAAGA TGAATATACT
GAAAGAGCAA AAAAGTCTGG ATGCATATTT AGAAACATCA AAAATTTAAA TGATATTGAA
GCAGTTGAAT TAGCAAGAAG TGATCAGTTA GATATTGCAG TAGATCTCAT GGGATATACC
AGACACAATA GAATGCCTAT ATTCTCATAT AGGGTGGCAC CAATACAAAT CAATTACTTA
GGTTATAATG GTTCTATTGG CTCAGATACT ATTGATTATA TTATCGCGGA TAAAATCACA
ATTCCGAGAG AGTATGAAAA ATTTTATTCC GAAAAAGTAA TACGATTGCC AAATTGCTTT
ATATGTGATG ATCATAAAAA AGAAATTTCT AAAGAGTCCA TATCTCGTAA AGATTTCAAC
CTTCCTGACC AAGGCTTTAT ATTTACTTGT TTTAATAATA ATTATAAAAT AACAGAAAAA
GAATTTAATA TATGGATGAA CTTACTTAGA AAAATAGAAG GAAGTGTTCT TTGGTTATAT
AAGGCAAATC AATGGTCAAT GAATAATTTA TACAAGGAAG CGAGTAAACG AAAAGTAGAT
CGAGACAGAA TAATATTCTC TGAAAAATTA CCAATGAGCA AACATCTAGC TAGGCATTCT
CTAGGTGATT TAGCACTTGA TACTTTTAAT TACAATGGAG GTGTGACTAG TTCTAATGCG
TTGTGGACTG GTTTACCAGT GCTTACAAAA ATAGGTCAGA ATTTTACTGC TAGGATGTCT
GCCAGCCTGC TTACATCATT GGGACTTCCC GAATTAATTA CTTATAGTGA AAGTGAATAC
GAAGATAAAG CTTTATATAT TGCTAGCAAC TCTGAAGAGA TTATTCGATT GAAATCTAAA
TTAAACAAAT CGAAAGAAAC ATCACCACTT TTTAATTCAA AATTATTTAC GCAAGATCTT
GAAAATATTT ATCTTGATCT GGTAAAAAAA TAA
|
|---|
| Protein sequence | MEQIFKQSQD KKKINEVKTF SVPFALEENK DNITIYTNTT SETSKQKIIN QAIKFHLQGN
ILEAKKYYQY IIDQGFNDHR VFANYGAILR DLGKLKDAVL AVREAIKINP NFAEAYCNMG
IIFKDLGNLQ DAEFYTRKAI QINPDSALAY SNLGIILKDL GNLQDAEFYT RKAIQINPNL
PEAYSNLGII LKDLGNLQDA EFSYRKAIQI NPNLPEAYFN LGIILKDLGN LQDAEFSYRK
AIQIKPKLAN SHNNLGIILK DLGKLQDAEL SYRKAIQINP DYAEAYSNLG STLKEQGNFT
DAINQFKHAL KLNNELTSAK AGLMSTKGNI CDWSDERTRN IWLKSLGIKG KAINPWGLLS
LENNPLNHLK RSKKFYKEKY IRPTQYIKPS PKSLIHIGYF SADFLNHPVM QLIAPLLELH
DKYRFKIYLY SFVPKEDEYT ERAKKSGCIF RNIKNLNDIE AVELARSDQL DIAVDLMGYT
RHNRMPIFSY RVAPIQINYL GYNGSIGSDT IDYIIADKIT IPREYEKFYS EKVIRLPNCF
ICDDHKKEIS KESISRKDFN LPDQGFIFTC FNNNYKITEK EFNIWMNLLR KIEGSVLWLY
KANQWSMNNL YKEASKRKVD RDRIIFSEKL PMSKHLARHS LGDLALDTFN YNGGVTSSNA
LWTGLPVLTK IGQNFTARMS ASLLTSLGLP ELITYSESEY EDKALYIASN SEEIIRLKSK
LNKSKETSPL FNSKLFTQDL ENIYLDLVKK
|
|---|
| |