Gene PMN2A_1016 details

Gene Information

• Locus tag: PMN2A_1016
• Symbol: rpoB
• ID: 3606402
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. NATL2A
• Kingdom: Bacteria
• Replicon accession: NC_007335
• Strand: -
• Start bp: 1509791
• End bp: 1513078
• Gene Length: 3288 bp
• Protein Length: 1095 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637687885
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_292209
• Protein GI: 72382854
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0988562
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAGAA GCGCGATTCA GGTAGCCAAA GCAGCTACAT ATCTGCCTGA TCTGGTTGAG 
GTGCAAAGAT CAAGTTTTAA GTGGTTTTTG GATAAAGGCT TAATAGAAGA ATTAGACAAT 
TTTTCTCCCA TTACTGACTA TACAGGTAAG CTTGAGCTGC ATTTTATTGG AGCAGAATAT 
AAGCTTAAGC GTCCTAGGCA TGATGTAGAA GAAGCAAAAA GAAGAGATGC AACGTTTGCT 
TCTCAAATGT ATGTCACTTG TCGCTTAGTG AATAAAGAAA CCGGAGAGAT TAAAGAACAA 
GAAGTTTTTA TAGGTGAACT ACCTTTAATG ACTGAACGTG GAACTTTTAT AATTAATGGT 
GCTGAGAGAG TAATAGTCAA TCAAATCGTT CGCAGTCCAG GAGTTTATTT CAAAGATGAG 
CAAGATAAAA ATGGTAGGAG AACTTACAAT GCAAGCGTTA TTCCTAATCG CGGAGCATGG 
TTAAAGTTTG AAACTGATAA AAACGATTTG CTGCATGTTC GTGTAGATAA AACAAGAAAA 
ATAAATGCCC ATGTTTTAAT GAGGGCAATG GGTTTATCAG ATAATGACGT TATAGATAAA 
TTACGACATC CTGAGTTTTA TAAAAAGTCA ATTGATGCGG CAAATGAAGA AGGTATAAGT 
TCAGAAGACC AAGCATTGTT AGAGCTTTAT AAAAAGTTAA GACCAGGTGA ACCTCCATCA 
GTAAGTGGTG GCCAACAGCT ACTCCAAACA AGATTTTTTG ATCCAAAACG ATATGATTTA 
GGAAGGGTTG GTAGATATAA AATAAATAAG AAATTACGCT TAACTATTCC TGATAATTTA 
AGAACACTAA CCAACGAAGA TGTTCTTTCT ACCTTAGATT ATTTAATCAA TTTAGAATTA 
GATGTTGGTG GAGCTACTTT GGATGATATT GATCATTTAG GTAATAGAAG AGTTAGGTCA 
GTTGGTGAAC TTCTACAAAA TCAAGTTCGA GTTGGTTTAA ATAGACTTGA AAGGATAATT 
AAAGAGAGGA TGACCGTTGG TGAGACAGAT TCACTTACCC CTGCGCAATT GGTAAATCCA 
AAACCTTTAG TAGCAGCAAT AAAAGAATTT TTTGGTTCAA GTCAATTAAG TCAATTCATG 
GATCAAACCA ATCCATTAGC TGAATTAACT CATAAAAGAC GTATCTCTGC TTTGGGACCA 
GGAGGTTTAA CTCGTGAAAG AGCTGGCTTT GCCGTTCGGG ATATTCATCC ATCTCACTAC 
GGAAGACTTT GTCCGATTGA AACACCTGAA GGACCAAATG CAGGACTGAT TAATTCGTTA 
GCAACTCACG CACGAGTAAA TGAATACGGT TTTATTGAGA CACCATTTTG GAAAGTGGAA 
AATGGTCGAT TAATCAAGGA AGGTGATCCT ATTTATCTTT CTGCAGATCT AGAAGATGAA 
TGTAGGGTTG CGCCAGGTGA TGTGGCTACA AACGAAGAAG GGAAAATAAT GGCAGAACTT 
GTTCCAGTTA GGTATCGACA AGATTTTGAA ACGGTTTCTC CTGAACAAGT TGATTATGTC 
CAACTATCAC CTGTTCAGGT TATTTCTGTG GCTGCATCAT TAATTCCATT TTTGGAACAC 
GATGATGCTA ACAGGGCTTT GATGGGTTCC AACATGCAAA GACAAGCAGT TCCTCTTTTG 
CGTCCAGAAA GGCCTTTAGT TGGGACTGGT TTAGAGACTC AAGTTGCTAG AGACTCTGGC 
ATGGTTCCAA TTTCAAAAGT AAATGGAAAA GTGACTTATG TTGACGCCAA TGCAATTGTC 
GTTACTGATG ACGAGGGAAA TGATCACACG CATTACTTGC AAAAATATCA GAGATCTAAT 
CAAGATACTT GTTTAAACCA TAGGCCTATA GTGTTTAATG GTGACCCAGT AATTGTTGGT 
CAAGTTTTAG CTGATGGTTC GGCATGTGAA GGAGGGGAAA TAGCTCTTGG TCAAAATGTA 
TTAATTGCAT ACATGCCATG GGAAGGATAC AACTATGAAG ATGCAATTCT TGTTAGTGAA 
AGGTTAGTTA AAGATGATCT ATATACCTCT GTCCATATAG AAAAATATGA AATAGAAGCT 
CGTCAAACCA AGCTAGGTCC TGAAGAAATA ACAAGAGAAA TCCCAAATGT TTCAGAAGAA 
AACCTTGGGA ATTTGGATGA AATGGGAATA ATACGAATAG GAGCTTACGT TGAGAGTGGT 
GACATACTTG TTGGAAAAGT AACCCCTAAA GGAGAATCAG ATCAGCCTCC CGAGGAAAAA 
CTTTTAAGAG CTATTTTTGG AGAAAAAGCT AGAGATGTAA GAGATAACTC TCTCCGAGTT 
CCTTCAACTG AAAGAGGAAG AGTAGTTGAT GTAAGGATCT ATACAAGAGA GCAAGGTGAT 
GAGTTACCAC CTGGCGCAAA TATGGTTGTA AGAGTCTATG TAGCGCAACG CAGGAAAATT 
CAAGTTGGCG ATAAAATGGC AGGAAGGCAT GGCAACAAAG GGATTATAAG TAGAATACTG 
CCAAGAGAGG ATATGCCTTA TCTTCCTGAT GGCACACCTG TAGACATATG CCTCAATCCA 
CTTGGGGTTC CAAGCAGAAT GAATGTAGGA CAAGTCTTTG AGCTTCTTAT GGGTTGGGCT 
GCCTCAAACT TGGATTGCAG AGTTAAAATT GTCCCATTTG ATGAGATGTA TGGACCAGAA 
ATGTCTAATC AGACTGTACA AGCCTATTTA AAAAAGGCTG CAAAGCAGCC AGGTAAATCA 
TGGGTATACA ACCCTAAGGA CCCTGGGAAG TTACTCCTTA AGGATGGTCG AACCGGTGAA 
CCTTTTGATC AACCAGTTGC CGTTGGCTAC GCTCACTTCC TAAAACTTGT GCATCTAGTC 
GATGATAAAA TTCATGCTCG ATCAACAGGT CCATATTCTT TAGTTACTCA ACAGCCTCTA 
GGTGGAAAGG CTCAACAAGG AGGACAGAGG CTTGGGGAAA TGGAGGTATG GGCACTTGAG 
GCTTATGGGG CAGCATATAC TTTGCAAGAA CTTTTAACTG TAAAGTCTGA CGACATGCAA 
GGTCGGAATG AGGCTCTTAA TTCGATTGTT AAAGGCAAGC CAATTCCAAG GCCTGGGACT 
CCAGAATCTT TCAAGGTTTT AATGAGAGAA CTTCAGTCAT TGGGATTAGA TATTGGAGTT 
TATACAGATG ATGGAAAAGA AGTTGATCTA ATGCAAGATG TCAATCCTCG TAGAAGCACG 
CCAAGTAGAC CTACCTATGA ATCATTAGGT AAAGAATACG AGGAGTAA 

 

Protein sequence

MSRSAIQVAK AATYLPDLVE VQRSSFKWFL DKGLIEELDN FSPITDYTGK LELHFIGAEY 
KLKRPRHDVE EAKRRDATFA SQMYVTCRLV NKETGEIKEQ EVFIGELPLM TERGTFIING 
AERVIVNQIV RSPGVYFKDE QDKNGRRTYN ASVIPNRGAW LKFETDKNDL LHVRVDKTRK 
INAHVLMRAM GLSDNDVIDK LRHPEFYKKS IDAANEEGIS SEDQALLELY KKLRPGEPPS 
VSGGQQLLQT RFFDPKRYDL GRVGRYKINK KLRLTIPDNL RTLTNEDVLS TLDYLINLEL 
DVGGATLDDI DHLGNRRVRS VGELLQNQVR VGLNRLERII KERMTVGETD SLTPAQLVNP 
KPLVAAIKEF FGSSQLSQFM DQTNPLAELT HKRRISALGP GGLTRERAGF AVRDIHPSHY 
GRLCPIETPE GPNAGLINSL ATHARVNEYG FIETPFWKVE NGRLIKEGDP IYLSADLEDE 
CRVAPGDVAT NEEGKIMAEL VPVRYRQDFE TVSPEQVDYV QLSPVQVISV AASLIPFLEH 
DDANRALMGS NMQRQAVPLL RPERPLVGTG LETQVARDSG MVPISKVNGK VTYVDANAIV 
VTDDEGNDHT HYLQKYQRSN QDTCLNHRPI VFNGDPVIVG QVLADGSACE GGEIALGQNV 
LIAYMPWEGY NYEDAILVSE RLVKDDLYTS VHIEKYEIEA RQTKLGPEEI TREIPNVSEE 
NLGNLDEMGI IRIGAYVESG DILVGKVTPK GESDQPPEEK LLRAIFGEKA RDVRDNSLRV 
PSTERGRVVD VRIYTREQGD ELPPGANMVV RVYVAQRRKI QVGDKMAGRH GNKGIISRIL 
PREDMPYLPD GTPVDICLNP LGVPSRMNVG QVFELLMGWA ASNLDCRVKI VPFDEMYGPE 
MSNQTVQAYL KKAAKQPGKS WVYNPKDPGK LLLKDGRTGE PFDQPVAVGY AHFLKLVHLV 
DDKIHARSTG PYSLVTQQPL GGKAQQGGQR LGEMEVWALE AYGAAYTLQE LLTVKSDDMQ 
GRNEALNSIV KGKPIPRPGT PESFKVLMRE LQSLGLDIGV YTDDGKEVDL MQDVNPRRST 
PSRPTYESLG KEYEE