Gene PMN2A_0955 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMN2A_0955 
Symbol 
ID3606341 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. NATL2A 
KingdomBacteria 
Replicon accessionNC_007335 
Strand
Start bp1450020 
End bp1451933 
Gene Length1914 bp 
Protein Length637 aa 
Translation table11 
GC content33% 
IMG OID637687825 
ProductTPR repeat-containing protein 
Protein accessionYP_292149 
Protein GI72382794 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAAAT CAGATAAACA AGAACAAAGA AAGAATCAAT TCACTGATAT AAAAACATTC 
CCCGTTTCAT TTGCTTTAGA AGAAATAAAA GAGAATATTT CTATTTTCAC TAACACTCCT
TCTAAACCTT CTAAAGAAGA AATCATTAAT CAAGCATTTA AGTTTCATTC ACAAGGAAAC
ATTTCAGAAG CAGCAAAATA TTATCAATAT TTAATCAATC AAGGTTTTAA TGATCACAGA
ATTTTTTCTA ATTATGGAAT AATTTTAAAA AGTCTTGGGA AATTAAAAGA AGCAGAATTA
TCTACTCAAA AAGCAATTGA AATCAAACCT GATTTCGCAG AGATGCATTC CAATCTAGGA
AATATATTAA GAGATCTTGA CAAGTTAAAA GAAGCAGAAA TCTCATTACG TAAAGCAATT
GAAATCAAAC CTAATTACGC AGAAGCATAT TATAATTTGG GAAATATATT AAAAGATCTT
GGCAAGTTAA AAGAAGCAGA AATCTCATAC CGCAAAGCAA TTGAAATCAA ACCTGATTAC
GCAAAGGCTC ATTACAATCT GGGAAACTTG TTGAAAGATA ATGGCAAGTT AAAAGAAGCA
GAATTGTCAT ACCTCAAAGC AATTGGAATC AAACCTGATT ACGCAAAGGC TCATTCCAAT
CTGGGAAACT TATTGAGAGA ACTTGGAAAC TTACAAGAAG CAGAAATGTC ATATCGCAAA
GCGATTGAAC TCAATCCTAC TTTCGCAGAG GCTCATTACA ATCTGGGAAA CTTATTGAAA
GAACTTGGAA ATTTACAAGA AGCAGAAATG TCATATCGCA AAGCGATTGA AATTAAACCT
GATTACGCAG AGGCTCATTC CAATCTGGGA AACTTATTGA GAGAACTTGG AAACTTACAA
GAAGCAGAAA TGTCATATCG CAAAGCGATT GAAATTAAAC CTGATTACGC AGAAGCATTT
TGGAATCTTT CATTAGTTGA ACTACTTCAA GGTGACTATA TAAATGGTTT AGAAAACTAT
GAATTTAGAT TCAAAAAAAA GAAGCCTACT ATTACTCAAT GTATTACAAA ACTCAAACGA
ATCGAGCACA AAAAATTACA AAAAGGAGAA AAGCTATTAG TCGTCACTGA GCAAGGTTTA
GGAGATACCC TTCAATATAT GAGATATATT CCTTACCTTA GAAATCAAGG ACTCAATATT
TCTTTTTGTG CTCAAACAAA ACTACATTCA TTGATCCAAG CCTCAGGGAT TGATCAAAAT
CCATTAACTC CAGAACAAGC TGAGACAATT TCAGACGGTA AATGGATACC ACTATTATCT
TTACCTAGAT ATCTACAAGT ACGTCAAAAA AATCCAATCA TTTCCAAACC ATATATCTTT
TCAACAGATG AACTAACGAA GAAGTGGAGG GATATACTCT CTGAAGAAAA AAGACCAATC
ATTGGTATTA ACTGGCAAGG GAATCCAAAT GTCGAAAAGG AAGAACTAAA AGGTCGCTCA
CTAGCTTTAG AAACCTTTGC CACTCTTGCT AGGAACAATA ACTTTAAATT TCTTTCACTA
CAAAAAGGTT TTGGTTCAGA GCAACTTGAA AAATGCTCTT TCAGAAATAA GTTTGTTAAC
GGCCAAGCTC AAATTGATGA GACTTGGGAT TTTCTTGAAA ATGCTGCCAT AATTGAAAAC
TGTGATTTAA TTATTACTTC TGACACTTCA ATTGCTCACC TAGCTGGAGG ATTAGGCAAA
TCAACCTGGT TACTCCTTCA ACATATTCCT GAATGGAGGT GGGGACTTGA AAGGGAGAAT
ACATTTTGGT ACCCATCGAT GAGATTATTT CGTCAAAAAG AGCGACATAA TTGGCAAGAG
GTTATGGAAA GAGTATCAAG TAAACTAAAA AAGAAATTAG AAGAACAAAT ATAA
 
Protein sequence
MEKSDKQEQR KNQFTDIKTF PVSFALEEIK ENISIFTNTP SKPSKEEIIN QAFKFHSQGN 
ISEAAKYYQY LINQGFNDHR IFSNYGIILK SLGKLKEAEL STQKAIEIKP DFAEMHSNLG
NILRDLDKLK EAEISLRKAI EIKPNYAEAY YNLGNILKDL GKLKEAEISY RKAIEIKPDY
AKAHYNLGNL LKDNGKLKEA ELSYLKAIGI KPDYAKAHSN LGNLLRELGN LQEAEMSYRK
AIELNPTFAE AHYNLGNLLK ELGNLQEAEM SYRKAIEIKP DYAEAHSNLG NLLRELGNLQ
EAEMSYRKAI EIKPDYAEAF WNLSLVELLQ GDYINGLENY EFRFKKKKPT ITQCITKLKR
IEHKKLQKGE KLLVVTEQGL GDTLQYMRYI PYLRNQGLNI SFCAQTKLHS LIQASGIDQN
PLTPEQAETI SDGKWIPLLS LPRYLQVRQK NPIISKPYIF STDELTKKWR DILSEEKRPI
IGINWQGNPN VEKEELKGRS LALETFATLA RNNNFKFLSL QKGFGSEQLE KCSFRNKFVN
GQAQIDETWD FLENAAIIEN CDLIITSDTS IAHLAGGLGK STWLLLQHIP EWRWGLEREN
TFWYPSMRLF RQKERHNWQE VMERVSSKLK KKLEEQI