Gene PMN2A_0856 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMN2A_0856 
Symbol 
ID3606237 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. NATL2A 
KingdomBacteria 
Replicon accessionNC_007335 
Strand- 
Start bp1359686 
End bp1360627 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content41% 
IMG OID637687722 
ProductDNA-directed RNA polymerase sigma subunit (sigma70/sigma32) 
Protein accessionYP_292050 
Protein GI72382695 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.366395 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTTCAA CTGCACCCAA GCCTGCTGAA TCACAAAAAC GACGCAGCAG TGATCCAATT 
AGTTGGTACC TTTCCTCCAT AGGACGAGTT CCTCTTTTAA CTCCTGCTGA GGAAATTGAA 
CTTGGTAATC AAGTTCAAAC GTTGATGAGT CTTACCGAGG ATGGCCAGAT TAAAGAGCAG 
AGCAAAGAAT TTACCTCTCA TCAAAGAAGA TTGATTCGAA TTGGAAGAAG GGCAAAGGAA 
AGAATGATGA AGGCCAATCT TAGGTTGGTT GTCAGTGTTG CAAAGAAATA TCAGGGAAAA 
GGTCTTGAAC TTTTAGATTT AGTTCAGGAA GGTTCTCTTG GGTTAGAAAG AGCGGTAGAA 
AAATTTGACC CTACTCGTGG ATATAAGTTT TCTACTTATG CATTTTGGTG GATAAGGCAA 
AGCATGACTA GAGCAATAGC TTGTCAGTCC AGAACAATCC GATTACCTGT TCATTTAAGT 
GAGAGATTAG CGACCATTAG AAAAGTCAGC TTAGATTTGG CTCATAAGCT CGGTGCAATG 
CCCAGCCGTA TTGAAATAGC TGAGGCAATG GAAATTGAGT TAGAAGAACT TGATTCGATT 
TTGAGACAAG CTCTGACCAC AAGCAGTCTT GACGCACCCG TTAATGGAGA TGAAGGTCGT 
AGCTTTTTAG GTGATCTAAT AGCTGACGGT TCTGGAGAAG AACCTCTAGA TAAGGTAGAA 
CAAAAAATTC ATCAAGAACA ACTTGGAAGG TGGTTAAGTC ATTTAAGCGA ACAAGAACAG 
CACGTTATTA GGCTTAGATT TGGCTTAGAG GGTAATGAAA GACATACTCT CGCAGAGATA 
GGAAGATTGT TACAGGTTTC ACGCGAGAGG GTAAGGCAAG TTGAGCTAAA AGCTTTAAGG 
AAATTGAGGA ATCTCACTAG AAAGCTTCCA AGTGGAATTT GA
 
Protein sequence
MVSTAPKPAE SQKRRSSDPI SWYLSSIGRV PLLTPAEEIE LGNQVQTLMS LTEDGQIKEQ 
SKEFTSHQRR LIRIGRRAKE RMMKANLRLV VSVAKKYQGK GLELLDLVQE GSLGLERAVE 
KFDPTRGYKF STYAFWWIRQ SMTRAIACQS RTIRLPVHLS ERLATIRKVS LDLAHKLGAM 
PSRIEIAEAM EIELEELDSI LRQALTTSSL DAPVNGDEGR SFLGDLIADG SGEEPLDKVE 
QKIHQEQLGR WLSHLSEQEQ HVIRLRFGLE GNERHTLAEI GRLLQVSRER VRQVELKALR 
KLRNLTRKLP SGI