Gene PMN2A_0413 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMN2A_0413 
Symbol 
ID3605787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. NATL2A 
KingdomBacteria 
Replicon accessionNC_007335 
Strand- 
Start bp954713 
End bp955345 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content37% 
IMG OID637687273 
ProductNAD-dependent DNA ligase 
Protein accessionYP_291608 
Protein GI72382253 
COG category[L] Replication, recombination and repair 
COG ID[COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGCTCGAC ATCTTCCTAT TGATATAGAT ATGAGATTAC TTGGACTTGA TAAGGATTGC 
TTCTCTAGCT GGTGGGCAAA GTTACCAGAG GGATCAACCA TGGTTGTGCA GCCTAAAATC 
GATGGGTGTG CAATAGGACT TAGATACAAA TATGGACAAT TAGTAGATGC CTATACTCGT 
GACGATAGTG AGATTATTGA AAACATTAGG AATATTAATT CTATTCCTTT GAGTATTGAT 
GACTCTCTAA AAGTTGAAGT TGAGTTGGAG GGAGTTTTAT ATACACCTTT TTCTAATTCA 
AAGATCTCGA TAGAGCAATT GCTTTCGAAC TCATTCTCGG AAATTGACAA TAGTACCTCA 
ATTTTATTTA AAGCATTCCA AATTTTTTGC TCTAAAAGTG ATGAGTTGTC AGATTTGACC 
CAACTTCAAA ACTGGGGATT CGAGGTCCCC ATAACTCTAA GAACTGATGA TCCTAGGCAA 
GTCAAAAGAT GGCATTCTCA ATGGATCAAG AATGAATTGT TTTCAAATCT TCCTACCAAT 
GGAATCGTTG CTAAATGCAA TTCCTCTTTG ACTAAGAATT TTTTGGGCTC TAGTCCTTCC 
TCTCCCAATT GGGCTTTGGC TTTAACTAGA TAA
 
Protein sequence
MARHLPIDID MRLLGLDKDC FSSWWAKLPE GSTMVVQPKI DGCAIGLRYK YGQLVDAYTR 
DDSEIIENIR NINSIPLSID DSLKVEVELE GVLYTPFSNS KISIEQLLSN SFSEIDNSTS 
ILFKAFQIFC SKSDELSDLT QLQNWGFEVP ITLRTDDPRQ VKRWHSQWIK NELFSNLPTN 
GIVAKCNSSL TKNFLGSSPS SPNWALALTR