Gene PMN2A_0109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMN2A_0109 
SymbolispG 
ID3605460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. NATL2A 
KingdomBacteria 
Replicon accessionNC_007335 
Strand+ 
Start bp663867 
End bp665066 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content38% 
IMG OID637686965 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_291304 
Protein GI72381949 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGGAA ATAATCTCTC TCAGCGATAT AGCACCAGAA TTATTCGTAG AGATACTAGG 
CCAGTAATGG TCGGTGATAT TGGCATCGGT GGAGATAATC CAGTGCGTGT TCAATCAATG 
ATTAATGAAG ATACGATGGA TATCGAGGGT TCAACGGCCG CAATAAGGAG ATTGCATGAA 
GTTGGATGTG AGATTGTCAG ATTAACAGTG CCAACTCTTG CAAGTGCAAA AGCTGTGGGG 
GAAATCAAGA AACTTCTAGC TAGCACTTAT CAACCAGTTC CTCTAGTAGC CGATGTTCAT 
CATAATGGAA TGAAAATAGC TTTAGAAGTA GCTAAGCATG TAGATAAAGT TCGTATCAAC 
CCTGGATTAT TCGTTTTTGA AAAACCTGAT CCCAATAGAA CTGAATTTAC TAAAGATGAA 
ATTGATGTAA TTAAAGAGAA GATCATACAA AAATTCAAAC CAATTGTTAA TACTTTAAAA 
GAGCAAAATA AGGCACTCAG AATAGGCGTT AACCATGGAT CTTTGTCTGA AAGAATGTTA 
TTTGCTTATG GAGATACTCC ATTTGGCATG GTTGAATCAG CTATGGAATT TATTCGAATA 
TGTCATTCAT TAGATTTTCA TAATATTGTA ATTTCGATGA AGGCTTCTCG AGCTCCCGTG 
ATGCTTGCAG CTTATAGAAT GATGGCTGAC ACAATGGACA AAGAGGGATT TAATTATCCT 
CTGCATTTAG GTGTAACGGA AGCGGGAGAC GGGGATTATG GAAGAATTAA AAGTACGGTA 
GGGATAGGGA CATTATTATC CGAAGGTATT GGAGATACCA TTAGAGTTTC TTTAACAGAG 
GCGCCCGAAA AAGAAATACC AGTTGCATAT TCAATTTTAC AAGCGGTTGG TTTGAGAAAA 
ACCATGGTTG AATATATTAG TTGTCCTAGT TGTGGTAGAA CATTATTTAA TTTAGAGGAA 
GTTGTAGCAA GAGTTAGAGA CGCTACTCAA CATTTAACGG GTTTGGATAT TGCTGTAATG 
GGTTGCATTG TTAATGGTCC TGGAGAGATG GCAGATGCTG ATTATGGTTA TGTAGGAAAA 
GGTGTTGGTA CCATTGCTCT TTATAGGAAT AGAGATGAAA TTAAGAGGGT ACCTGAGGAT 
GAAGGCGTTC AGGCATTGGT TGATTTAATT AAAGAGGATG GTAAATGGGT AGATCCTTAA
 
Protein sequence
MEGNNLSQRY STRIIRRDTR PVMVGDIGIG GDNPVRVQSM INEDTMDIEG STAAIRRLHE 
VGCEIVRLTV PTLASAKAVG EIKKLLASTY QPVPLVADVH HNGMKIALEV AKHVDKVRIN 
PGLFVFEKPD PNRTEFTKDE IDVIKEKIIQ KFKPIVNTLK EQNKALRIGV NHGSLSERML 
FAYGDTPFGM VESAMEFIRI CHSLDFHNIV ISMKASRAPV MLAAYRMMAD TMDKEGFNYP 
LHLGVTEAGD GDYGRIKSTV GIGTLLSEGI GDTIRVSLTE APEKEIPVAY SILQAVGLRK 
TMVEYISCPS CGRTLFNLEE VVARVRDATQ HLTGLDIAVM GCIVNGPGEM ADADYGYVGK 
GVGTIALYRN RDEIKRVPED EGVQALVDLI KEDGKWVDP