| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_3040 |
|---|
| Symbol | |
|---|
| ID | 3580803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 3552841 |
|---|
| End bp | 3555558 |
|---|
| Gene Length | 2718 bp |
|---|
| Protein Length | 905 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637686772 |
|---|
| Product | ATPase, E1-E2 type |
|---|
| Protein accession | YP_291096 |
|---|
| Protein GI | 72163439 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0474] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01517] plasma-membrane calcium-translocating P-type ATPase
[TIGR01523] potassium and/or sodium efflux P-type ATPase, fungal-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGGAC CAGCGGTTGT GGACCGGCAG TGGCACACTG TGGCCGCCCA CGAAGTATTC
CCGGCCTTGG AGACGTCCCC GGACGGGCTC ACCGAGGAGG AGGCGCGTCG TCGTCTCGCC
GAGTACGGGC CGAACCGGTT GGAGGAGGCC CCGCCTCCGT CAGCCGTGGC GGTGTTCCTC
CGCCAGTTCG CCAGCCCGGT CATCGCGATC CTGCTGTTCG CTTTGCTCCT CACGGTTGTC
CTCCGTGAAT GGCTGGACGC CGCGGTGATC GCGGCAGCGC TGCTGGTGAA CGCGGGTATC
GGTTTCGTCC AGGAGCGCAA AGCCGAACAG GCGGTGCGGG CGCTGATGAA TCTGAGTCAG
CCTCGTGCCC GCGTGGTGCG GGACGGCCGC CGCCGCGAGG TGGAGAGCAC CGATCTCGTG
CCCGGGGACG TGGTGTTCAT CGAGTCCGGC AGCCGTATCC CCGCTGACAT CCGCCTGGTG
GAGGCGCACG CCCTGGAGGT CGACGAGTCG CTGCTGACCG GGGAGTCGGA GCCGGTGGTG
AAGTCCACGG CGACGGCGGC CGCCGACGCC GGGGTGGGGG ACCGCAGCGG CGTCGCGTTT
TCGGGGACGA TGGTGGTCAG CGGGCGCGGC ATGGGGGTGG TGTACGCCAC CGGTAGGCGC
ACCGAGCTGG GCGCGATCGC TGGGCTGTTG AAGAGCGAAC CGGAGACGGC GACTCCGCTC
AAGGAGCGGA TGACGCGGCT GTCCCGGGTG ATTGTGGCCG CCACCCTGGT GTCTGCGCTG
CTGGTCATGG CGATCGGTTT GGTGCGGGGC GGCGACCCGA TGGAGCTGCT GCTGGTGGCG
GTGGCGCTCG CGGTTGCCGC GGTGCCCGAA GGGCTGCCGA TCGTGCTCAC GGTGGCTTTG
GCGGTCGGGG TGACCCGCAT GGCCCGCCGC AACGCGATCG TGCGCCGCAT GCTCGCGGTG
GAAGCGCTGG GCAGCGCCAC GGTGATCGGC TCGGATAAGA CGGGCACGCT GACCGAGAAC
CGGATGACGG TGCGGCGGTT GTGGAGCCCG GCGGGCGGGG AGGCCGGCCC GGCAGCGGTC
ACCCCCTATT GGGGGAATAT CACGGAGCTG CCTCTCGAAC AGGTCGACCC GTATGTGCTG
CTGGTGCTGT GCGGGGCGTT GACGAATGAG GCCACGATGG CTTCCGAGGA GGGGAGGGAA
GCTTCCGGGG ATCCGACCGA GGTGGCGCTG CTGGAAGCCG CGTACGACGC GGAACTGCTG
CACACGGCAC GGGATGTGCG GTTTCCGAAG ACCGCGGAGG TGCATTTCGA ACCGGCCCGC
CGTTTTTCCG CGACGGCCCG CCGCTGGGGG AACCGGGAGG TCTTGTTCGT CAAGGGAGCC
CCGGAACGGG TGGTGGAGAT GTGCGACGCC CAAGTGGGCC GGGTGGAAGC GGGACGGTGG
CAGCCCGCTG CGCTGCGGCC CGGGGAGCTG CACGCGGCCG GGGAGCGGAT GGCCGCGGAA
GGGCTGCGGC TGCTGGCTTT GGCGGTGAGC AGACCGTACG AGCCGGGAGC CGCATCCGTG
GATCCGCACG ACCCGTCGGG GCTAGTACTG CTCGGCCTGG TCGGCATCAT GGATCCGCCG
CGCCCCGGGG TGCGGGAGGC GGTTCAGGAC TGCCGCGAGG CAGGGGTCCG GGTGGTGATG
ATCACCGGGG ACCATGCGGT CACGGCCCGC GCGATCGCCG CAGAGCTGGG GATCTGCGAG
CCGGATGCGC CGGTGCTCAC CTACCAGCAG ATTGCGGGGT TGGACGACGA GGAGTTGCGG
GCCGCGGTCG CCCAGGTGAA CGTCTACGCC AGGATTCCCC CGGAAGGCAA GCTGCGGCTG
GTGCGGGCGT TGGAAGCCAA CGGCGAAGTG GTGGCGGTGA CCGGGGACGG GGTCAATGAT
GCGCCCGCGT TGAAAGCGGC ATCGGTGGGT GTGGCGATGG GCCAGGAAGG CACCGATGTA
GCGCGGGAGG CAGCCGAGAT TGTGTTGGCT GACGACAACT TCACCACGAT CGTGCACGCG
GTGGAGGAGG GGCGGGTCAC GTTCGACAAC ATTCGGCGCG CCGTGTTCTT CCTGGTGTCG
ATCGGCGCGG CCATGGTGGT GGCGTTGACC GTGTCCACGC TGCTGGGGTG GCCGCTGCTC
ATGGTGCCCG CCCAGTTGCT GTGGCTGAAC CTGGTGACGA GCGGGGTGCA GGACATCGCT
TTGGTGTTCG AACGCGCCGA ACCGGGCCTG CTGCGGCGGC CGCCGCGCTC GGTGCACGAG
GGCATTCTCT CGCGGCTGCT GTGGCAGCGG GTGGGGGTGA CGGGTGTGGT GATGGCAGCG
GGCACGCTCG CGATGTTCTG GTGGGAGTGG CAGCGCACCG CATCGTTGAC GGCGGCGCAG
ACGATGGCGT TGACGACCAT GGTGGTGTTC ATGGCGTTCC AGGCGGGGAA TGCCCGGTCC
GACACCCGGT CGGTGCTGGG GATGCCGCTG CGGTACAACC CTTACCTGGT GGTGGCCGTG
GCCGGCTCGT TCGCGCTGCA CGTGGCAGCG TTGTATTTCC CGCCGACCCA GGTTTTGCTG
CGGGTGGAGC CGTTGGACGC TGCCGCGTGG GCGCGGATCG CTGCGGTGGC GGTCAGTGTC
GTGGTGGTGG TTGAGCTGGA GAAGATGGTG CGCCGCGCGT GGGCGCGGCA CGGGGAGCCA
TCAGGGGCCC GGCAGTAG
|
|---|
| Protein sequence | MTGPAVVDRQ WHTVAAHEVF PALETSPDGL TEEEARRRLA EYGPNRLEEA PPPSAVAVFL
RQFASPVIAI LLFALLLTVV LREWLDAAVI AAALLVNAGI GFVQERKAEQ AVRALMNLSQ
PRARVVRDGR RREVESTDLV PGDVVFIESG SRIPADIRLV EAHALEVDES LLTGESEPVV
KSTATAAADA GVGDRSGVAF SGTMVVSGRG MGVVYATGRR TELGAIAGLL KSEPETATPL
KERMTRLSRV IVAATLVSAL LVMAIGLVRG GDPMELLLVA VALAVAAVPE GLPIVLTVAL
AVGVTRMARR NAIVRRMLAV EALGSATVIG SDKTGTLTEN RMTVRRLWSP AGGEAGPAAV
TPYWGNITEL PLEQVDPYVL LVLCGALTNE ATMASEEGRE ASGDPTEVAL LEAAYDAELL
HTARDVRFPK TAEVHFEPAR RFSATARRWG NREVLFVKGA PERVVEMCDA QVGRVEAGRW
QPAALRPGEL HAAGERMAAE GLRLLALAVS RPYEPGAASV DPHDPSGLVL LGLVGIMDPP
RPGVREAVQD CREAGVRVVM ITGDHAVTAR AIAAELGICE PDAPVLTYQQ IAGLDDEELR
AAVAQVNVYA RIPPEGKLRL VRALEANGEV VAVTGDGVND APALKAASVG VAMGQEGTDV
AREAAEIVLA DDNFTTIVHA VEEGRVTFDN IRRAVFFLVS IGAAMVVALT VSTLLGWPLL
MVPAQLLWLN LVTSGVQDIA LVFERAEPGL LRRPPRSVHE GILSRLLWQR VGVTGVVMAA
GTLAMFWWEW QRTASLTAAQ TMALTTMVVF MAFQAGNARS DTRSVLGMPL RYNPYLVVAV
AGSFALHVAA LYFPPTQVLL RVEPLDAAAW ARIAAVAVSV VVVVELEKMV RRAWARHGEP
SGARQ
|
|---|
| |