| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2994 |
|---|
| Symbol | |
|---|
| ID | 3581918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 3504614 |
|---|
| End bp | 3505909 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637686725 |
|---|
| Product | putative transport protein |
|---|
| Protein accession | YP_291050 |
|---|
| Protein GI | 72163393 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCAC CGCCGACGAA TCACGGCAGC ACCACCGCTC ACCCCGGTGC GTCTCCGGTT
GCGTCCACCC AGTACCAAGG AGCCATGGCT TTTTTCCTCC TGCGGAAGCG CGAAGGCAGC
GATGTCCGGT CCCGTGGTCC GCTCGCTGAC CGGGACTTCC TTCTCCTGCT GGCGGCGACC
GTCGGTGTGT TCACCAACTA CGCGCCCCTG CTGTCCGTGG TCCCGCTGTG GGCCGCGGTG
GGCGGCTCGG ACCACAGCGG GGTGGGCACC ACGACCGCGG TGACCATGGC GACAACCGTC
GGCATCCAGG TGTGTATGAG CCGCCTGCTG CGCTGGTGGG GGCCGTACCG GCTCTTCGTC
GCCGGGGCGC TGCTGCTCGG CGTGCCGACG TTCGGTTACC CGCTCTCCGC GGACCTGGGG
TGGATCTTGG CGGTGTGTGC GGTGCGGGGC CTCGGCTTCG GCATCGTCAC CGTGGTGGGA
AGCGCGCTCG TCGCCGAGCT CACCACTCCT GACCAGCGCG GCAGGGCTGT GGGGTGGCAC
GGGGTCGCCG TCGGCATCCC CCAGATCGGG TTTCTTCCGC TAGGAGTGTG GGCGGCGGAC
ACGTTCGGTT TTCCCGCCGT CTTCCTGGTC ACAGGGCTGT CTAGTTCCTT GGCTGCTCTC
CTCGTCGGCG GGATGACCCG GCGGAGCACG GCCTACGGCA GCCGACCGGA AGCCGACCAG
CCGAGTTCCC GCCGCGTTCC GCTCCGCCCG CTCACCGCGC CCTGCCTGGT CATGCTCGTC
TCCGCGTGCG CCCTGGGCGG CGCCACCGCG TTCCTGCCGC TGGCAGTGGA CACCGTGATC
GTCTCGGCCT CCCTGTTCGC GCTCTCTGCC GCGATGACCA CGGGACGGTG GTGCGCGGGG
GCGTGGAGCG ACCGCTACGG CGCGGGACGC CTCCTCGTTC CCGGCGCGAT CCTGTGCGCC
GCGGGAATGG CGGGCCTCGC GGTCGCGGTC GCCGCGTTCC CGGTCCTGGC TGTCGCCGCC
GCGGCGCTCT ACGGGTTCGG TTTCGGCACC GTGCAGAACG ACGCCATGGT CGTGATGTTC
CACCGCGCTG GCCCGCAGAA CCACGGCACG GCCAGCGCGG CCTGGAACGT CTCCTTCGAC
GCGGGCACCG GGGCGGGGTC GGTCTCGGCC GGGCTCATCG CGCAGGCCGT GTCCATTCCC
GGCGCCTACG GTGCTGCCGC GTTCCTCATC ACCGCCGCGG TCCCCTTCGC GTGGCGTGAT
GCCGGACGCA GGCGCGGCAG CGCACCCGCC CGTTGA
|
|---|
| Protein sequence | MPAPPTNHGS TTAHPGASPV ASTQYQGAMA FFLLRKREGS DVRSRGPLAD RDFLLLLAAT
VGVFTNYAPL LSVVPLWAAV GGSDHSGVGT TTAVTMATTV GIQVCMSRLL RWWGPYRLFV
AGALLLGVPT FGYPLSADLG WILAVCAVRG LGFGIVTVVG SALVAELTTP DQRGRAVGWH
GVAVGIPQIG FLPLGVWAAD TFGFPAVFLV TGLSSSLAAL LVGGMTRRST AYGSRPEADQ
PSSRRVPLRP LTAPCLVMLV SACALGGATA FLPLAVDTVI VSASLFALSA AMTTGRWCAG
AWSDRYGAGR LLVPGAILCA AGMAGLAVAV AAFPVLAVAA AALYGFGFGT VQNDAMVVMF
HRAGPQNHGT ASAAWNVSFD AGTGAGSVSA GLIAQAVSIP GAYGAAAFLI TAAVPFAWRD
AGRRRGSAPA R
|
|---|
| |