| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2970 |
|---|
| Symbol | |
|---|
| ID | 3581894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 3478272 |
|---|
| End bp | 3480650 |
|---|
| Gene Length | 2379 bp |
|---|
| Protein Length | 792 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637686701 |
|---|
| Product | putative phosphoketolase |
|---|
| Protein accession | YP_291026 |
|---|
| Protein GI | 72163369 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3957] Phosphoketolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.319467 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATCGA CCGAATCAGT TCCCCGCCAG GCTCTCACCG TCACCGAACT CCAGGAGATC
GACCGCTACT GGCGGGCCGC CAACTATCTG TCTGTCGGCC AGATCTATCT CCAGGACAAT
CCGCTGCTCC GCGAACCGCT CGTCCCCGAG CACATCAAAC CGCGGCTGCT CGGCCACTGG
GGCACCACGC CCGGCCTCAA CTTCATCTAC GCCCACCTCA ACCACCAGAT CCGCAGCCGC
GGCACGGAGA TGATGTGGAT CGTCGGCCCG GGGCACGGCG GGCCTTCCCC CGTCGCCACA
GCATGGTTGG ACGGCGTCTA TTCGCAGATC TATCCGGACG TCGGCCGAAA CGCGGAAGGC
ATGCGCCGGC TGTTCCGCCA GTTCTCCTTC CCCGGCGGAG TGCCCAGCCA CGCTGCCCCG
GAGACCCCCG GCTCCATCCA CGAAGGCGGC GAGCTCGGCT ACGCGCTCGC CCACGCTTTC
GGTGCAGCCT TCGACAACCC CGACCTGGTT GTCGCCGCGG TCGTCGGGGA CGGTGAAGCC
GAAACCGGCG CCCTGTCCGG AAGCTGGCAG TCGATCCGTT TCCTCAACCC GGCGCGCGAC
GGCGCAGTCC TGCCGATCCT GCACCTCAAC GGCTACAAGA TCGCCGGGCC GACCGTGCTG
GCCCGCATCC CCGAGGAAGA CCTGCTGGCC CAGATGCGCG GGCACGGCTA CGAACCGCAT
GTGGTTGCGG GCGACGACCC GGACACGGTC CACCAGTTGA TGGCCGGGAC TCTCGCGAGC
TGCCTGGAAC GCATCGACAC GATCCGGTTC CGTGCCCGGC AGGAGGACGG GGACATCGCG
AACGTGCGCT GGCCCATGAT CATCCTGCGC ACCCCTAAAG GCTGGACTGG TCCCCGCGCC
GTGGACGGAA AACCCGTGGA AGACACGTGG CGTTCCCACC AGGTGCCGCT TGCTGCCACG
CGGGAGAACC CGGAGCACTT GCGCCTGTTG GAGGAGTGGC TGCGCAGCTA CCGTCCGGAG
GAGCTGTTCG ACGAGCACGG CGCGCCCCGC CCGGAGACCA CGACGGTGGT GCCCCCGCCG
GACTGCCGGA TCAGCAGCAG CCCGCACGCC AACGGGGGCC TGCTGCTGCG TGACCTCCTC
CTGCCGGACT TCCGGGACTA CGCCGTCGAG GTAGAACGCC CCGGTGTGGA CATGGTGGAA
GCCACCCGGG TACTGGGCGG GTTCCTCCGC GATGTGGTCG CCGCGAACCC GCACAACTTC
CGGATCATGG GCCCTGATGA GACCCAGTCC AACCGGCTCG GCGCGGTCTT CGAGTCCACT
GACCGGGCGT GGACCACGGA ACGCCTCCCT GTCGACCAGC AGCTCTCCCC CGATGGGCGG
GTGATGGAGG TCCTCAACGA GCAGCTCTGC CAAGGCTGGC TGGAGGGCTA CCTGCTGACC
GGGCGGCACG GCCTGTTCAA CTCCTATGAG GCGTTCATCC ACATCGTGGA CTCGATGGTC
AACCAGCACG CCAAATGGTT GAAGGTGAGC CGCGAGCTGC CGTGGCGGCG TCCCATCTCT
TCGCTGAATT ACCTGCTCAG CTCGCACGTG TGGCGCCAGG ACCACAACGG GTTCAGCCAC
CAGGACCCCG GCTTCATCGA CCACGTCGTC AACAAGAAAC CCGAGATCAT CCGGGTCTAT
CTCCCGCCGG ACTGCAACAC GCTCCTGTGC ACCATGGACC ACTGTCTGCG GTCGCGGAAC
TTCATCAATG TGGTCATCGC CGGCAAGCAG CCGCAGCTCA CCTACCTGCC GATGGAAGCG
GCGATCGCGC ACTGTACGCG GGGCGCGGGG ATCTGGGAGT GGGCGAGCTC GGACGAGGGT
GCAGAGCCTG ACGTGGTGCT GGCCTGTGCG GGGGACGTGC CCACCCTGGA GACGCTGGCC
GCAGCGGACC TGCTCCGCCG CCACCTGCCT GAGCTGCGGG TGCGTGTGGT CAACGTGGTG
GACCTGATGC GGCTCAGCAA CGAAGGCGAG CATCCGCACG CTATGACCGA CCGCGAATAC
GACACCTTGT TCACCCGGGA CAAGCCGGTG ATCTTCGCGT TCCACGGCTA CCCGTGGCTG
ATCCACCGGC TGACCTACCG CCGCGCCGGG CATCCCAACC TGCATGTGCG CGGCTACAAG
GAGGAAGGCA CGACGACCAC CCCGTTCGAC ATGGTGATGC TCAATGACTT GGACCGCTTC
CACCTGGTGA TGGACGTGAT CGACCGGGTG CCCGGGCTGG GGGTGCGCGC AGCCGGGCTC
CGCCAGCACA TGCAGGACGA GCGGCTGCGC TGCCGCGCCT ACACCCGCCA GTACGGGGAG
GACGCCCCGG ACATCCGCAA CTGGGTGTGG GAGCCCTGA
|
|---|
| Protein sequence | MTSTESVPRQ ALTVTELQEI DRYWRAANYL SVGQIYLQDN PLLREPLVPE HIKPRLLGHW
GTTPGLNFIY AHLNHQIRSR GTEMMWIVGP GHGGPSPVAT AWLDGVYSQI YPDVGRNAEG
MRRLFRQFSF PGGVPSHAAP ETPGSIHEGG ELGYALAHAF GAAFDNPDLV VAAVVGDGEA
ETGALSGSWQ SIRFLNPARD GAVLPILHLN GYKIAGPTVL ARIPEEDLLA QMRGHGYEPH
VVAGDDPDTV HQLMAGTLAS CLERIDTIRF RARQEDGDIA NVRWPMIILR TPKGWTGPRA
VDGKPVEDTW RSHQVPLAAT RENPEHLRLL EEWLRSYRPE ELFDEHGAPR PETTTVVPPP
DCRISSSPHA NGGLLLRDLL LPDFRDYAVE VERPGVDMVE ATRVLGGFLR DVVAANPHNF
RIMGPDETQS NRLGAVFEST DRAWTTERLP VDQQLSPDGR VMEVLNEQLC QGWLEGYLLT
GRHGLFNSYE AFIHIVDSMV NQHAKWLKVS RELPWRRPIS SLNYLLSSHV WRQDHNGFSH
QDPGFIDHVV NKKPEIIRVY LPPDCNTLLC TMDHCLRSRN FINVVIAGKQ PQLTYLPMEA
AIAHCTRGAG IWEWASSDEG AEPDVVLACA GDVPTLETLA AADLLRRHLP ELRVRVVNVV
DLMRLSNEGE HPHAMTDREY DTLFTRDKPV IFAFHGYPWL IHRLTYRRAG HPNLHVRGYK
EEGTTTTPFD MVMLNDLDRF HLVMDVIDRV PGLGVRAAGL RQHMQDERLR CRAYTRQYGE
DAPDIRNWVW EP
|
|---|
| |