| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2494 |
|---|
| Symbol | |
|---|
| ID | 3580753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 2937813 |
|---|
| End bp | 2939693 |
|---|
| Gene Length | 1881 bp |
|---|
| Protein Length | 626 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637686210 |
|---|
| Product | lipoprotein LpqB |
|---|
| Protein accession | YP_290550 |
|---|
| Protein GI | 72162893 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0457772 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATCGGAC AGGCGAACCG GATTGCTGCC GCGGTCTCGA CCGCCTGTCT CGCTGTCCTG
CTTGCCGGGT GTGCCACTGT CCCCACCGGG GGGCCGACTT TCGAAGGCCG CGGGGGCGGC
GCCCAGGGGC AGGTGGACAC CTTCACTCGC CTGCTTCCCG CCGGACCGCA GCCCGGCTGG
GGAGAGAACG CGCTGGTCCG CGGCTTCCTC AAGGACTTGG GCAGTTTCGA GGAGAACCAC
GAGGCGGCCC GGCTGTACAT GACCGAGGAG TGCGCCGACG TCTGGCAGCC CAGCGACCGG
GTGCTCGTCT ACGAGGAGAT GGATGCGGTC CGCTTCGACG TGGAGACGGT CGAGGAGGAG
CGCGCGGCAC GGGTGCGGGT CCGCACCCCG CTGTACGCCA CGATCCGCCC GGACGGCCAG
TACGTGCCCG CCTCACCGGG AGAAGCGATC GACGTCGTCT TCGACCTGAC CAAGGTCGAC
GGCGAGTGGC GGATCGCGAA CCTGCCCGAC ACCATCCTGC TGAGCCGCCA GGACGTGGAC
CGGGTGTACC GCCCGCTCAA CCTGTACTAC TTCAACCGGG ACATGAGCAC CCTGGTACCG
GACCCGGTGT TCCTGCCGGT GAGCTCCGCG GTGAACATCA CGGAGCAGCT CTCCCAGCGG
CTGGTCACGA TGCTGCTGGA CGGGCCCACG GACTGGCTGG CGCCCGCGGT GCGCACCTCG
TTCCCCGCGG GGACCACCGC CACCGTGGAG TACTCCTCGG GCAATGTCAC CGTGAACCTC
GACCACCGGG CCGCGGCCGC CGACCCCCGC CGGCTCTTCG GCATGGGCGC CCAACTGGTG
TGGACCCTCA AACAGCTCCC CGAGATCCAG GAGTTCACGC TGCGGCTCGA CGGCGAAGAG
GTGGAGCTCC CCGGAGTGGA GGACGGGGTG CTGCAGGCCA GCAGCCAAGA GTGGAACTCG
GTGAACCCGG CGGGAATGAC CGGTTCGCCG CGCGCCTACT TCCTGCGGGA CGGCCAACTG
TGGTCGCTCG ACGTCGACCA GCGGGAGGCT CTCGTGCCCG GGGCGGCCGG GCACGGACGC
ATCCTGGTGG AGGAGCACGC GGTCTCGCTG GACGAGACCC GGGTGGCGGG CATCATGCCG
GACGACGACT CGGTCCGGGT CGCTCCGATC GCCGAGGACG GCGAGTATAC GACCGTGCTC
CAGGGAGGCG ACTACACCTC GCTGTCGTGG GACGGCTACG GCAACCTGTG GGTGGTGGAG
GACCTTTCCG CGGAAGTCGC CGAGGCGGAG CGGGAAGAGG ATCTCGCGGA CGACACCGAG
CCGGGCGACA CCGCGGTGGG GAGCACGGAG CGCCGGGAAA CGGACCGCGG AGAGAAGCGC
CAGGTGACCC GGCTGTGGCT GCTCGCCGAG GATGCGGACC CGGTCGAGGT GCACGCGCCG
GAGCTCGCCG GGGTTCCCGT CACTGAGCTG CGGGTCTCCC GGGACGGCAC CCGGGTGGCG
GTTCTGACCG GAGGCGCCGA CGGCGGCCAG GTCCTGGTGG GCCGCGTGGT CCACGGCGAA
TCGACGGTGA GCCTGCAAGC CTTCCTGCCC CTGGCCCGGG ACTTGGTGAC CGTCACCGAC
CTGTCGTGGC GCGGTGCCGA CCAGCTGGCG GTCCTGGGGC AGAAGGAGCG CGGCGCGATC
CAGGCCTACC TGGTGTCGCT CAACGGCAGC GGGGAGTCCA CCAGCGCGGG CGCGGTGACC
GGATCGGACA TGAAGACCAT TACCGCGGCC CCGGGAATGC CCCTGCTGTC AGGGACTGAA
GAGGACACGA TCTCCTCGTC CAGCGACCGC CTCATGTGGC GGCGGGCAGT GGAGGGCACC
AAACCCGTCT ACCCAGGCTA A
|
|---|
| Protein sequence | MIGQANRIAA AVSTACLAVL LAGCATVPTG GPTFEGRGGG AQGQVDTFTR LLPAGPQPGW
GENALVRGFL KDLGSFEENH EAARLYMTEE CADVWQPSDR VLVYEEMDAV RFDVETVEEE
RAARVRVRTP LYATIRPDGQ YVPASPGEAI DVVFDLTKVD GEWRIANLPD TILLSRQDVD
RVYRPLNLYY FNRDMSTLVP DPVFLPVSSA VNITEQLSQR LVTMLLDGPT DWLAPAVRTS
FPAGTTATVE YSSGNVTVNL DHRAAAADPR RLFGMGAQLV WTLKQLPEIQ EFTLRLDGEE
VELPGVEDGV LQASSQEWNS VNPAGMTGSP RAYFLRDGQL WSLDVDQREA LVPGAAGHGR
ILVEEHAVSL DETRVAGIMP DDDSVRVAPI AEDGEYTTVL QGGDYTSLSW DGYGNLWVVE
DLSAEVAEAE REEDLADDTE PGDTAVGSTE RRETDRGEKR QVTRLWLLAE DADPVEVHAP
ELAGVPVTEL RVSRDGTRVA VLTGGADGGQ VLVGRVVHGE STVSLQAFLP LARDLVTVTD
LSWRGADQLA VLGQKERGAI QAYLVSLNGS GESTSAGAVT GSDMKTITAA PGMPLLSGTE
EDTISSSSDR LMWRRAVEGT KPVYPG
|
|---|
| |