Gene Tfu_2332 details

Gene Information

• Locus tag: Tfu_2332
• ID: 3581252
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermobifida fusca YX
• Kingdom: Bacteria
• Replicon accession: NC_007333
• Strand: +
• Start bp: 2745520
• End bp: 2747388
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 637686043
• Product: putative cholesterol oxidase
• Protein accession: YP_290388
• Protein GI: 72162731
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG2303] Choline dehydrogenase and related flavoproteins

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCACG AGCAGCACTC CACCCTTCCC ACCGGGGACG ACGACCGGTT CGACTACGAC 
GTCATCGTCG TCGGTTCAGG ATTCGGCGGC TCAGTCAGCG CGCTGCGCCT TACCGAGAAG 
GGCTACCGGG TCGGAGTCCT CGAGGCCGGA CGCCGCTTCA CCCCCGAGAC CCTGCCGAAG 
AACTCCTGGG ACCTGCGCAA CTTCCTCTGG GCGCCTCGGC TGGGGTTCTT CGGCATCCAG 
CGCATCCACC TGCTGCGCGA CGTCATGATC CTGGCTGGGG CCGGGGTCGG CGGCGGCTCC 
CTCAACTACG CCAACACCCT CTACGAACCA CTGGACGACT TCTACAACGA CCCGCAGTGG 
CGGGACATCA CCGACTGGCG AGAAGAACTC GCCCCCTTCT ACGACCAAGC CAAACGCATG 
CTCGGGGTGC GGACCAACCC CACCGTCACC CCTGCGGACG TCCACCTGCG CCACGCCGCC 
GAGGCCATGG GGGTCGGCTC CACCTTCCAC CTCGCCCCGG TCGGCGTCTT CTTTGGCGAC 
GGCAAGGACG GGGCGGCCAC CCAACCGGTC TCCCCCGGCG AAGCCTGCCG CGACCCCTAC 
TTCGGGGGTG CCGGCCCGAC CCGGCGCGCC TGCCTGGAGT GCGGGGAGTG CATGACCGGT 
TGTCGGCACG GCGCAAAAAA CATGCTCACC GAGAACTACC TGTACTTCGC GGAGCGCCAT 
GGCGCCGTCA TCCACCCCAT GACCACCGTG GTAGCGATCC GCGAACGCCC TGCCTCCCTC 
GGCGGCGGCT ATGCGGTCGA CACCGTAGCC ACCGGTGCTT TCCGCACCCG GCGCGCCACC 
CGCACGTTCA CCGCCCGCTA CATCGTGCTC GCTGCTGGCA CCTACGGCAC GCAGCGCCTC 
CTGCACGCCA TGCGCGACTC CGGGCTCCTG CCCCGCATCT CCCCCAAGCT CGGCACGCTC 
ACCCGCACCA ATTCCGAAGC CCTCGTCGGC GCGATGACCA AGGCGATACG CCCGCCCCAG 
GACTTCACGC AGGGCGTGGC GATCACCTCC TCCATGCACC CTGACGCGCA CACGCACATC 
GAGCCGGTCC GCTACGGCAA AGGCTCCAAC GCGATGGGGC TGCTCACCAC CATGCAAGTC 
CCCGGCGGGG GACGCATCCC CCGCTGGCTG CGCTTCCTCG GCGTAATCGC CGCCCACCCC 
TACCTCTTCA TGCGCAGCCT GTCCGTGCGC CGCTGGTCGC AGCGGACCAT CATCGGCCTG 
GTCATGCAGT CCCTGGACAA CTCGCTGACC ACCTACACCC GGCGGGGACT GTTCGGCCGG 
CGGGTGCTGA CCTCTCGGCA GGGCCACGGC GCTCCCAACC CCACGTGGAT CCCGGTGGCC 
CAGCAGTTCG CCGCCCAGAT CGCCAAACAG ATCGACGGCT ACCCGGGCAG TTGCGTCAGC 
GAAATCTTCG ACATCCCGTT GACCGCGCAC TTCCTGGGCG GCTGCCCGAT CGGCGCCTCC 
CCCGAGGAAG GTGTAATCGA CCCCTACCAC CGGCTCTACG GCCATCCCGG CATCCACGTG 
GTGGACGGGT CAGCCGTCAC CGCCAATCTG GGCGTCAACC CGTCGTTGAC GATCACCGCC 
CAAGCGGAAC GCGCCATGGC GATGTGGCCC AACAAGGGGG AGCCTGACCC GCGGCCCGCT 
CCGGGCTCCC CCTACCAGCG GGTGGAGCCG GTCTACCCGG TCCGTCCAGC AGTGCCGGCA 
GGCGCCTACG CGGAGCTGCG GTTCACCCGC CGCATTGCGC TCCCCTTGGA CGTGAGCCGA 
CCGCAGCGCA CCCCGGGAGG CACCGGCACG GACACGGTCA GGCGGACCGA TGCTCCGCCC 
GCTCCTTGA 

 

Protein sequence

MTHEQHSTLP TGDDDRFDYD VIVVGSGFGG SVSALRLTEK GYRVGVLEAG RRFTPETLPK 
NSWDLRNFLW APRLGFFGIQ RIHLLRDVMI LAGAGVGGGS LNYANTLYEP LDDFYNDPQW 
RDITDWREEL APFYDQAKRM LGVRTNPTVT PADVHLRHAA EAMGVGSTFH LAPVGVFFGD 
GKDGAATQPV SPGEACRDPY FGGAGPTRRA CLECGECMTG CRHGAKNMLT ENYLYFAERH 
GAVIHPMTTV VAIRERPASL GGGYAVDTVA TGAFRTRRAT RTFTARYIVL AAGTYGTQRL 
LHAMRDSGLL PRISPKLGTL TRTNSEALVG AMTKAIRPPQ DFTQGVAITS SMHPDAHTHI 
EPVRYGKGSN AMGLLTTMQV PGGGRIPRWL RFLGVIAAHP YLFMRSLSVR RWSQRTIIGL 
VMQSLDNSLT TYTRRGLFGR RVLTSRQGHG APNPTWIPVA QQFAAQIAKQ IDGYPGSCVS 
EIFDIPLTAH FLGGCPIGAS PEEGVIDPYH RLYGHPGIHV VDGSAVTANL GVNPSLTITA 
QAERAMAMWP NKGEPDPRPA PGSPYQRVEP VYPVRPAVPA GAYAELRFTR RIALPLDVSR 
PQRTPGGTGT DTVRRTDAPP AP