| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2317 |
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| Symbol | |
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| ID | 3580604 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 2723860 |
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| End bp | 2727834 |
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| Gene Length | 3975 bp |
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| Protein Length | 1324 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637686026 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_290373 |
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| Protein GI | 72162716 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.704668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACGC CGTCCGTGAA ATCCCCGTTC GCTGACCTGC GGCGCCGCCT GCCCGGACTC
ATGCCGCGCG ACCGCCACCG CCTGCGCCGC CGGATCGACG GCGCGGAAAA AATCCGCGAC
CCCGACCGGC GCCGCGCTGT CGCCGCGGAG ATCAGCGCCG ACATCGACAC CTGCGAAGCC
AGAGTCGAAC GGCGCCGCTC GGCTTTTCCG GCGATCGACT ACCCAGCAGA GCTGCCGGTC
AGTCAGAAAA AAGACGAGAT TCTCGCCGCG ATCCGCGACC ACCAAGTCGT GATCGTGGCT
GGTGAGACCG GTTCCGGGAA GACCACCCAG TTGCCGAAGA TCTGCCTGGA ACTGGGCCGG
GGAGTGCTCG GACAGATCGG CCACACCCAG CCGCGTCGGC TGGCCGCCCG CACCGTCGCT
GCCCGCATCG CTGAGGAACT AGGCACGACT CTGGGGGAGT GGGTCGGCTA CAAAGTCCGG
TTCACCGACG TCTCCAGCGA CGACACCCTG GTCAAGTTGA TGACTGACGG CATCCTGCTG
GCCGAGATCC AGCAGGACCG GATGCTGCGC GCCTACGACA CGCTCATCAT CGACGAGGCG
CACGAGCGCA GCCTCAACAT CGACTTCATC CTCGGCTACC TCAAACGGCT GCTGCCCCGC
CGCCCCGACC TGAAGGTAAT CATCACCTCA GCCACCATCG ACCCGGAACG GTTCTCCCGA
CACTTCGACA ACGCGCCCAT CGTCGAAGTG TCCGGTCGCA CCTACCCGGT CGAAGTGCGG
TACCGGCCGC TCACCGCCGA ACAGGTGGTA GACGACGAGG ACACCGTCGC AGCCACCGAC
GACCGCGACC AGATCCAAGG CATCTGCGAT GCCGTGGACG AACTCTGCGC TGAAGGCCCC
GGCGACATCC TCGTCTTCCT GAGCGGGGAA CGCGAGATCC GCGACACCGC GGAGGCCTTG
GGGAAACACC TGGCCCGCCG CTACCCCGAA GGCAGCCCGC AGGCCGTGGA GATCCTGCCG
CTGTATGCGC GGCTGTCCGC AGCCGAACAG CAACGCGTGT TCCAACCGCG CGGCAAACGG
CGGATCGTCC TGGCCACCAA CGTCGCAGAA ACCTCGCTGA CCGTGCCCGG AATCCGGTAC
GTGGTCGACC CGGGCACCGC GCGAATCTCC CGGTACAGCC ACCGCACCAA AGTGCAGCGC
CTGCCGATCG AACGGATCTC GCAGGCCTCC GCCAACCAGC GCAAGGGACG CTGCGGCCGG
GTCGCCGAAG GCATCTGCAT CCGGCTGTAC TCGGAAGAAG ACTTCCTCTC CCGGCCGGAG
TTCACCGAAC CGGAGATCCT GCGCACCAAC CTGGCCTCCG TCATCCTGCA AATGGCCGCG
CTCGGCCTCG GGGATGTCGA AGAATTCCCG TTCGTCGACG GCCCCGACCG GCGCCAGGTC
AAAGACGGTG TCGCACTCCT CACCGAGCTC GGCGCCCTCC AGCCCGCGAA GGACGGACGG
CACCGCCTCA CCGCGCTGGG GCGCACCCTG GCCCAGTTGC CCATCGACCC GCGCCTGGGC
CGCATGGTGG TGGAAGCCGA CCGCAACGGC TGCCTCCACG AGGTCATGGT GATCGCTGCT
GCGCTGTCCA TCCAAGACCC CCGCGAACGC CCGGTGGAAC AGCAGCAGGC CGCAGCCCAG
AAGCACGCCC GTTTCGCCGT CCCCGACTCG GACTTCCTGG CCTACCTGAA CCTGTGGAAC
TACCTGAACG AGCGGCAGCA GGAACTGTCC GGCAACCAGT TCCGCAAAAT GTGCCGCGAA
GAGTTCCTCA ACTACCTGCG GGTGCGGGAG TGGCAGGACA TCTATGCGCA GCTCCGCCAG
ATCGTGCAGT CCTTGGGGAT GAAGGTCAAC ACCGCCCCTG CCGACGCCAA GCGCATCCAC
CTGTCCCTGC TTGCCGGGCT CCTCTCCCAC ATCGGGCTCA AAGACCCGGA GAAACACGAG
TACCTGGGGG CGCGGGGCGC CCGGTTTGCG ATCTTTCCCG GCTCGGCGCT GTTCAAGAAA
CAGCCGCGCT GGGTGATGTC AGCCGAGCTG GTAGAGACGT CGCGGCTGTG GGCGCGCGTC
AATGCCCGCA TCGAACCCGA ATGGGTGGAA GAGCTCGCCG GCCACCTCGT GAAACGCACA
TACAGCGAAC CGCACTGGGA GAAGAAGCGG GGCGCGGTCA TGGCGTACGA GCGGGTGACC
CTCTACGGCG TGCCGATCGT CACTCAGCGC AAAGTCGACT ACGGCCGCAT CGACCCGAAG
ACCGCGCGGG AGCTGTTCAT CCGGCACGCC CTCGTCCAAG GGGAATGGGA TACCCGCCAC
GCGTTCTTCC GCCGCAACCA GAAGCTGCTG CAGGAGGTCG AAGAACTCGA GCACCGGGTG
CGCCGCCGTG ACATCCTCGT CGACGACGAC GTCCTCTTCG ACTTCTACGA CCAGCGGGTC
GGCGCTGAAG TGGTCTCCGT CCGGCACTTC GACAGCTGGT GGAAGCGGGT GCGCCAACAG
CAGCCGCGCC TGCTCGACTT CGACAAGTCG ATGCTCGTCG CTGAGGACGC CGGCGAAGGC
ATCGAAGAGG CCTACCCGGA CTTCTGGCAG CAAGGCGAGC ACCGCTTCCG GCTCACCTAC
CAGTTCGAAC CGGGGGACGC GGCCGACGGG GTGACCGTCC ACATCCCGTT GAACGTCCTC
AACCAGGTCA GCCCGGAAGG GTTCGACTGG CAGATCCCCG GCCTGCGGGA AGAACTGGTG
GTGGCCTTGA TGCGGTCACT GCCCAAAGCG ATCCGGCGCA GCTTCGTTCC CGTGCCCAAC
TACGCCGCCG ACGTGCTGAA ACGGCTGAAA CCCTACTCTG AGCCGCTGCT GGAAGCGCTG
TCGCGGGAGC TCACCGCGAT GGGCGGCCCC CGGGTCACCG TGGACGACTG GCAGCTCGAC
CGGGTCCCCG ACTATCTGCG GATGACGTTC CGCGCGGTCG ACGACAAAGG CCGCACGCTC
GCCGAAGCGA AAGACTTGGA GGAGCTGCGA CGCCGGCTGC AGCCCCGGCT TCGCAAAGCG
ATCTCGGCGG AGGCCGCGAG CATCGAACGC ACCGGGCTGA CCTCCTGGGA CTTCGGTCCG
CTGCCCCGGA CGTTCGAACG CCGCACTGCC GGGCACATAG TCCGCGGCTA TCCGGCCCTC
GTGGACGAGG GGACCACCGT TGGGGTGCGC ATCTTCGACA ATGCGGCAGC CCAGCAGCAG
GCCATGGTCG CAGGAACCCG GCGGCTGCTC ATGCTCACCG TGCCCTCCCC GGCCAAGTTC
CTCCGAGGGC ATCTGAGCAA CCAGACCACA CTGGTGTTCA GTCGCAGCCC GCACGGCTCA
GTCGCCGCCC TCTTCGACGA CTGCATCGGC TGCGCAGTGG ACTCGCTGGT CGCCGAGGCG
GGCGGACCGG TGTGGGACCC GGAGTCGTTC GCGAAGCTCC GCGAGCACGT GCGGGTGAAC
CTGGTGGAGC GGGTCATGGA GCTCCTCCCG GTCGTGGAGA AGATCCTCGC CACGGCACAG
CGGGTGGAGA AACAGCTCAA GAGCGTCACG AGCCTGGCAG TCCTGCCGTC CATCACCGAC
ATCCAGAACC AGCTCGGCGC GCTCATCGGC CCCGGGTTCG TCACCGCCGC CGGCTACCAG
CGGCTCCGGG ATCTGACCCG CTACCTCAAA GCGATCGAGG TGCGCCTGGA GCGGCTGCCC
CGCAACCCCC GCCGCGACCA GGTGAACATG GCCAAGATCG AGCAGCTGCG CCAGGCCTAC
CAGCAACTGC TCGACCGGCT CCCCCCGGGA GTGCCGCCCG GCCCAGCACA CGAGAACATC
CGCTGGATGC TGGAAGAACT GCGGATCAGC TATTTCGCCC AGGAGGTCGG CACCGCCTAC
AGCGTCTCCG AGAAACGCGT CCTCAAAGCG ATCAGCGAGG TCGAAGCCCG CATGCGCGAA
GGGGCACGGT CGTGA
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| Protein sequence | MKTPSVKSPF ADLRRRLPGL MPRDRHRLRR RIDGAEKIRD PDRRRAVAAE ISADIDTCEA
RVERRRSAFP AIDYPAELPV SQKKDEILAA IRDHQVVIVA GETGSGKTTQ LPKICLELGR
GVLGQIGHTQ PRRLAARTVA ARIAEELGTT LGEWVGYKVR FTDVSSDDTL VKLMTDGILL
AEIQQDRMLR AYDTLIIDEA HERSLNIDFI LGYLKRLLPR RPDLKVIITS ATIDPERFSR
HFDNAPIVEV SGRTYPVEVR YRPLTAEQVV DDEDTVAATD DRDQIQGICD AVDELCAEGP
GDILVFLSGE REIRDTAEAL GKHLARRYPE GSPQAVEILP LYARLSAAEQ QRVFQPRGKR
RIVLATNVAE TSLTVPGIRY VVDPGTARIS RYSHRTKVQR LPIERISQAS ANQRKGRCGR
VAEGICIRLY SEEDFLSRPE FTEPEILRTN LASVILQMAA LGLGDVEEFP FVDGPDRRQV
KDGVALLTEL GALQPAKDGR HRLTALGRTL AQLPIDPRLG RMVVEADRNG CLHEVMVIAA
ALSIQDPRER PVEQQQAAAQ KHARFAVPDS DFLAYLNLWN YLNERQQELS GNQFRKMCRE
EFLNYLRVRE WQDIYAQLRQ IVQSLGMKVN TAPADAKRIH LSLLAGLLSH IGLKDPEKHE
YLGARGARFA IFPGSALFKK QPRWVMSAEL VETSRLWARV NARIEPEWVE ELAGHLVKRT
YSEPHWEKKR GAVMAYERVT LYGVPIVTQR KVDYGRIDPK TARELFIRHA LVQGEWDTRH
AFFRRNQKLL QEVEELEHRV RRRDILVDDD VLFDFYDQRV GAEVVSVRHF DSWWKRVRQQ
QPRLLDFDKS MLVAEDAGEG IEEAYPDFWQ QGEHRFRLTY QFEPGDAADG VTVHIPLNVL
NQVSPEGFDW QIPGLREELV VALMRSLPKA IRRSFVPVPN YAADVLKRLK PYSEPLLEAL
SRELTAMGGP RVTVDDWQLD RVPDYLRMTF RAVDDKGRTL AEAKDLEELR RRLQPRLRKA
ISAEAASIER TGLTSWDFGP LPRTFERRTA GHIVRGYPAL VDEGTTVGVR IFDNAAAQQQ
AMVAGTRRLL MLTVPSPAKF LRGHLSNQTT LVFSRSPHGS VAALFDDCIG CAVDSLVAEA
GGPVWDPESF AKLREHVRVN LVERVMELLP VVEKILATAQ RVEKQLKSVT SLAVLPSITD
IQNQLGALIG PGFVTAAGYQ RLRDLTRYLK AIEVRLERLP RNPRRDQVNM AKIEQLRQAY
QQLLDRLPPG VPPGPAHENI RWMLEELRIS YFAQEVGTAY SVSEKRVLKA ISEVEARMRE
GARS
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