| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2292 |
|---|
| Symbol | |
|---|
| ID | 3579131 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 2696108 |
|---|
| End bp | 2696998 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637686001 |
|---|
| Product | putative peptide ABC transporter permease protein |
|---|
| Protein accession | YP_290348 |
|---|
| Protein GI | 72162691 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.00757502 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCCAT CGGGCCCCGC CACCAGCGCG CCGCGGCCCC CCGCACCGCC CTCCGCCCGC
TGGCCAGCCG GGCTCCGCCA CCCCCGCATC CTGGTGGGAG CCGGGCTACT GATCCTGCTC
ACCCTGCTCG CCTGGCTCGG CCCGCTCGCC GCACCATGGG GCTTCACCGA ACGCGACTAC
ACAAGCTTCC TGCAACCACC CTCCGCACGC CACTGGTTCG GAACCGACGG CAGCGGCCGA
GACCTGTACG TCATCACCCT GGTCGGCCTC CGCAAATCCC TCCTCATCGG ACTGCTCGTC
GCCGTCCTCA CCACCGCGCT CGCCGCCGTA GTCGGCGCCA TCACCGGATA CTTCCCCGGC
CTCCCCGACC GCCTCCTCAC CTGGCTCACC GACCTCGCCC TCGTCGTACC ACCCCTCCTC
GTCCTCGCTG TCCTCTTCCC CATCGTCGAC AAAGGCGGCT GGGTAGCCCT GATCCTGCTG
CTCGCCGCGT TCGGCTGGAT GGTCACCGCC CGCATGGTCC GCGCCGCCAC CCGCTCCCTG
CGGCACCACG AATACATCCG CGCCGCCCGC TACCTGGGTG CCTCCCCCAC CACGATCATC
ATCCGCCACC TGCTGCCCAA CCTGTCCGGC CTGCTCGTCG CAGACGTCAC CGTCAACGTC
AGCGCCGCGA TCCTCGCCGA GACCGGACTG TCCTACGTCG GACTCGGCGT CCAACCCCCC
GACGTGTCCC TCGGCACCCT GATCGCCCAC GGCACCCGGT ACGCCACCAC CCACCCGTGG
ATGTTCGGCT TCTGCACGGG GCTGCTCGTC CTCCTCGTCA CCGCCGTGCA CCTCCTCGGC
GAAGGACTCC GCGACGCCCT CACCCGCGGC ATCCCCGTCC ACCGCGCCTG A
|
|---|
| Protein sequence | MPPSGPATSA PRPPAPPSAR WPAGLRHPRI LVGAGLLILL TLLAWLGPLA APWGFTERDY
TSFLQPPSAR HWFGTDGSGR DLYVITLVGL RKSLLIGLLV AVLTTALAAV VGAITGYFPG
LPDRLLTWLT DLALVVPPLL VLAVLFPIVD KGGWVALILL LAAFGWMVTA RMVRAATRSL
RHHEYIRAAR YLGASPTTII IRHLLPNLSG LLVADVTVNV SAAILAETGL SYVGLGVQPP
DVSLGTLIAH GTRYATTHPW MFGFCTGLLV LLVTAVHLLG EGLRDALTRG IPVHRA
|
|---|
| |