| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2234 |
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| Symbol | |
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| ID | 3580903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 2630777 |
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| End bp | 2632363 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637685942 |
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| Product | spermidine synthase |
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| Protein accession | YP_290290 |
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| Protein GI | 72162633 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCGACA CCACACCGGC GCAACCAGCC GAGCAGAAGG AACGCCTGCC CCTGCCCCCG
CGGATCGCCC GGTTCGTCGT GCTGTTCGCG GTCTTCGTCT GCGCCGCGTG CGGCCTCGTC
TACGAGCTCG CTCTCGTCGC CCTCGGCAGC TACCTGCTCG GCGACACCAT CACCCAGGCG
TCCGTGGTCC TGGCGGTCAT GGTCTTCGCC ATGGGCGTCG GATCCCTGGC CTCCAAACAG
CTCACCCACC GGCCCGCGTT CTGGTTCGCC GTGGTGGAAG GCCTGCTGTC CCTGCTTGGC
GGCCTATCCG TCCTGATCCT TTATGCGGCG TTCGCCTGGT TCTCGCTCTA CCAGCCCGCC
CTCGTCAGCC TGTCCTTCCT CATCGGTGTC CTCATCGGCG CGGAAATCCC GCTGCTGATG
ACCCTCATCC AGCGCATACG CCGTCAAGAG GCCGCCAGTG CGGTCGCTGA CCTGTTCGCC
GCCGACTACG TGGGCGGCCT CATCGGCGGC CTTGCTTTCC CCTTCCTGCT CCTGCCCGTC
TTCGGACTGC TGGAAGGCGT GCTCCTGGTC GGCATCCTCA ACGCGGTCAC CGGAATAGCG
ATCGTGCTCT GGCTGTTCCG GCACTCCCTC ACCCGCGGCG GCAGGATCGG ACTCGCCGCC
GGGCTCGCCC TGGTCATGGC GGTGTCCGGG AGCGCACTCG CCCTGTCCGA GCGGTTCGAA
GTGGACGCCC GCCAAGCCCT CTACCGAGAC CCAGTGGTCT ACGCGGAACG CTCCGACTAC
CAGGAGATCG TCCTCACGGA GAACCTCGCC CGCACCGACC TTCGGCTGTT CCTCAACGGC
GACCTCCAGT TCTCCTCCCT GGACGAGTAC CGCTACCACG AGTCGCTCGT CCACCCGGTG
ATGAACGGGC CGCGCCGCAC CGTGCTCGTC CTCGGCGGCG GGGACGGCTT GGCCCTGCGC
GAAATCCTCG AATACGCGGA CGTGGCACGC GTTGTCCTCG TCGACCTCGA CCCGGCCGTA
GTTGACCTGG CTCGCACCCA CCCCCGCATC ACCGCGCTCA ACCGGGATGC GTTCGCCGAC
GAACGCGTCA CCGTCGTCCA CGACGACGCG TTCACCTGGC TGCGGACCAC CACCGAGCAG
TTCGACGCGA TCGTCGTGGA CCTCCCCGAC CCCGACGACG TCAACACCGC CAAACTGTAT
TCGGTGGAGT TCTACGGACT GGTCCGGCAG GCTATGGCGG AAGAAGCGCG GGTCGTCGTC
CAAGCCGGGT CTCCGTACTT CGCCTCCCGC GCCTACTGGA GTGTCGGACA GAGCATGGAG
GAAGCCGGAC TGCACACCAC CCCCTACCAC GTGGACGTGC CCAGCTTCGG CGACTGGGGG
TTCTTCCTCG CCGCGACCGA CCGTGCCCCC GCACTCACCC TCCCCGACGA CCTGCCCGAC
ACCGACTTCC TCGACGCGGC AGTCCTGCAC GCCGCCCAAG TCTTCCCCAA AGACCGGCGG
CCTGGGGCGC AGGGCGAATC CCAGCCGTCG ACCCTGCTGA ACCCGCGCAT CATCGACTAC
CACCGCACCG CGTGGGAAGG GTACTGA
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| Protein sequence | MVDTTPAQPA EQKERLPLPP RIARFVVLFA VFVCAACGLV YELALVALGS YLLGDTITQA
SVVLAVMVFA MGVGSLASKQ LTHRPAFWFA VVEGLLSLLG GLSVLILYAA FAWFSLYQPA
LVSLSFLIGV LIGAEIPLLM TLIQRIRRQE AASAVADLFA ADYVGGLIGG LAFPFLLLPV
FGLLEGVLLV GILNAVTGIA IVLWLFRHSL TRGGRIGLAA GLALVMAVSG SALALSERFE
VDARQALYRD PVVYAERSDY QEIVLTENLA RTDLRLFLNG DLQFSSLDEY RYHESLVHPV
MNGPRRTVLV LGGGDGLALR EILEYADVAR VVLVDLDPAV VDLARTHPRI TALNRDAFAD
ERVTVVHDDA FTWLRTTTEQ FDAIVVDLPD PDDVNTAKLY SVEFYGLVRQ AMAEEARVVV
QAGSPYFASR AYWSVGQSME EAGLHTTPYH VDVPSFGDWG FFLAATDRAP ALTLPDDLPD
TDFLDAAVLH AAQVFPKDRR PGAQGESQPS TLLNPRIIDY HRTAWEGY
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