| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2167 |
|---|
| Symbol | |
|---|
| ID | 3580386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 2540053 |
|---|
| End bp | 2542173 |
|---|
| Gene Length | 2121 bp |
|---|
| Protein Length | 706 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637685870 |
|---|
| Product | helicase c2:DEAD/DEAH box helicase, N-terminal |
|---|
| Protein accession | YP_290223 |
|---|
| Protein GI | 72162566 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1199] Rad3-related DNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGAACCC CCGCGGGAGA CCGCCCTGGC TCTCCTGTGG ACAACCGGCC GAACCTGCCG
CACCGACCCG GTACTGTCAG GGGCGTGTCT GATCTTCCCG ACGTCGACGA GCTCCTCGAC
GCGGCCGTGC GCGCCCTCAA CGGCACCCGG CGCGACGGCC AGGCGACCAT GGCCCGCTCG
GTGGCCGCAG CGATCGACAG CCGCGAACAC CTCGTCGTGC AGGCCGGCAC CGGAACAGGA
AAATCCCTGG GCTACCTGGT TCCGGCACTG CGCCACGCGG TCGCCGCCAA CGCCACGGTT
GTGGTCTCCA CCGCCACCAT CGCGCTGCAG AACCAGCTCA TCGGACGCGA CCTGCCGCGG
CTCACCGAGG CACTCGAACC GCTGCTGGGC CGCCGTCCCG TCTACGCGAT CCTCAAAGGA
CGGCGCAACT ACCTGTGCCG CTACCGCCTC TCCCAGGCAG CGACAGGTCC GGAAGAAGCT
GAACTGTTCG ACCCGCACCT GCTGTCCTCG CTCGGCCGCC AAGTGCGCCG GCTCCACGAA
TGGGCGGAGG AGACCCTCAC CGGGGACCGC GACGACCTCA CCCCGGGGGT GAGCGATCTG
GCCTGGCGGC AGGTCTCCGT GGGAGCCAAC GAGTGCATCG GGCCCCAGAT GTGCCCGGTC
AGCGACGACT GTTTTGCGGA GCTCGCCCGG GCCGAGACCA TCGGCGCGGA CCTCGTCGTC
ACCAACCACG CCCTGCTCGC TATCGACGCT GTCCAGGGCT ACCGGCTGCT GCCCGACCAC
GACCTGCTCA TCGTTGACGA AGCGCACGAG CTCGTCGACC GGGTCACCTC CGTGGCGACT
GGGGTGCTCA GTGACCGGAG CATCAGCCTT GCGGCGAAGC GGGCCGCCCC GGTCTGTGAC
GTGGAACTCA CCGAACGCCT CGCAGAGACC GCTGACGGGT TGGCGTTGAT GCTCGCCGAC
ACCCCGCCGG GCCGTCTCGA CCATCTGCCG GATCCGCTGG CCACCGCCGT AGCCGCAGTC
CGGGACGCCG CCCACGCCTG CCTTTCCGCG CTGCCCGAGC CGCCCCGGGA CGACCCGCAC
GCCGCCAGCG CCCGCCGGCT CGCCCTCGCC GGCCTCGAAG AAGTCCACTG CACCGCCGAA
CGGATCCTCC TCTGCGTCCA GCAGCCCCTC CGGGACCGGC AGGACGTGGT GTGGTTCGCG
CGCGGCGCAC GGCAGACCCC CGGACTTCGC ATCGCTCCCC TGGCTGTCAA CCGGACCCTG
CGCCAGGCCC TGTTCACCGA GCGCACCACG GTGCTGACCT CCGCCACCCT CGCTCTCGGC
GGCTCCTTCG ACCTGATGGC CCGGCAGTGG GGACTCGGCC CTCTGCCCGA TCATGACCCG
GCAGAGGCAG CAGAGCCCGC GGAAACCACT GCCACGCCCT CGGCCGAACC CAGCCCGCTC
CGGTGGCGCG CGATCGACGT GGGCTCACCG TTCAACCACG CCCGCAGCGG CATCCTCTAC
ATCGCCACCC ACCTGCCCCC GCCGGGCCGG GAGAGCCTCC ACCCCGAATA CCTCGACGAG
ATGGCGGAAC TCATCGACGC GGCAGGAGGG CGCACCCTCG GCCTGTTCTC CTCCACCCGG
GCAGCCGTGC ACGCCGCAGA AGAACTCCGG GAACGCCTGC CTTACCCGAT CCTGTGCCAG
GGGGACGACT CCACCGGCCA CCTCGTCCAG CAGTTCGCTG CAGACGAGGC CACCTGTCTG
TTCGGCACCT TGTCACTGTG GCAGGGCGTG GATGTCCCGG GACCGGCGCT GCAACTGGTC
ATCGTGGACC GCATCCCCTT CCCCCGGCCC GATGACCCGC TGGCCTCGGC CCGGCAGCGC
GCGATCGGTG CACAAGGAGG GAACGGGTTC CTCGAAGTCG CGGCTACCCA TGCCGCGCTG
CTCCTCGCCC AAGGCACCGG GCGGCTCTTG CGGTCCGTCC ACGACAAAGG GGTGGTCGCG
GTCCTCGACC CGCGGCTGGC CACCGCCCGC TACGGGGCGT TCCTCCGCGC CTCCCTGCCC
CCGTACTGGG GAACCACCGA CCCCCAAGTG GCCCGGGCGG CGCTGCGGAG ACTCCACGAG
GCAGCGTCCC GCGCGGCCTG A
|
|---|
| Protein sequence | MRTPAGDRPG SPVDNRPNLP HRPGTVRGVS DLPDVDELLD AAVRALNGTR RDGQATMARS
VAAAIDSREH LVVQAGTGTG KSLGYLVPAL RHAVAANATV VVSTATIALQ NQLIGRDLPR
LTEALEPLLG RRPVYAILKG RRNYLCRYRL SQAATGPEEA ELFDPHLLSS LGRQVRRLHE
WAEETLTGDR DDLTPGVSDL AWRQVSVGAN ECIGPQMCPV SDDCFAELAR AETIGADLVV
TNHALLAIDA VQGYRLLPDH DLLIVDEAHE LVDRVTSVAT GVLSDRSISL AAKRAAPVCD
VELTERLAET ADGLALMLAD TPPGRLDHLP DPLATAVAAV RDAAHACLSA LPEPPRDDPH
AASARRLALA GLEEVHCTAE RILLCVQQPL RDRQDVVWFA RGARQTPGLR IAPLAVNRTL
RQALFTERTT VLTSATLALG GSFDLMARQW GLGPLPDHDP AEAAEPAETT ATPSAEPSPL
RWRAIDVGSP FNHARSGILY IATHLPPPGR ESLHPEYLDE MAELIDAAGG RTLGLFSSTR
AAVHAAEELR ERLPYPILCQ GDDSTGHLVQ QFAADEATCL FGTLSLWQGV DVPGPALQLV
IVDRIPFPRP DDPLASARQR AIGAQGGNGF LEVAATHAAL LLAQGTGRLL RSVHDKGVVA
VLDPRLATAR YGAFLRASLP PYWGTTDPQV ARAALRRLHE AASRAA
|
|---|
| |