| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2140 |
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| Symbol | |
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| ID | 3581983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 2505566 |
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| End bp | 2507632 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637685843 |
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| Product | PAS/protein phosphatase 2C-like |
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| Protein accession | YP_290196 |
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| Protein GI | 72162539 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.731032 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACCG AGACGTCCGT CCCGTTTCTC CGAGTTTCCC CTATGCACCC CGTTGACTCC
GCACTCCTGG ACACGCTTCT CAAAGAGGCG CCCATCGGTT TCGCCTTCTT CACCCCGGAC
TTTTGCTTCC AGCGCGTCAA CCGTACCCTG GCCACTATTT ACGGGCGGTC GGCCGACGAA
TGCTACGGCC GCACGCCGGA CGACGTCCTT CCTCCGCCGG ACGCTGCAGA GCACAAGCGG
GCCCTTTCCG CGGTGCTGGC TGGTGAATCA GTGGTCTACA GCGACCACCA TCTCATCGGT
GGCACCCCCA GAAACCCCGA CGAGGAACGC CACTGGGCGC TGTCCTGGTT CCCCGCCTAC
GACGAGGGGA AGATCACCGG GGTGGCGCTG ATCGCGGTCG ACATCAGCGA ACGCCATAAG
GCGGAGTTGG CGCTACGGCG CAGCGAAGAG CGCTACCGCG CCCTGATGCA GGCGAGCAAC
CAGATTGTCT GGGCCGCCGC CCGCGACGGC CGAGTCGACG AAGACTGTCC GGAATGGCGC
GCCCTCACCG GCCAGTCGGT AGAGGAGTAC CTCGCCGAAG GCTGGCTGGC CGCGGTACAC
CCCGACGACC GCGAGCGCGT CCAGCTCGCA TGGGAAGACG CCGTTGAAGA CGGGACGGTC
TTCGAAGAGA ACTTCCGGGT CCGCCACCAC AGCGGCGAGT ACCGGCACTA CCGCACTCGC
GCAGTCCCCC TGACCCGCGA CAACCAGGTC GTGGAGTGGG TCGGCACGCA CGTCGACGTC
ACCGCCACCG ATGAGGTGCG GCAGCTCCTC ACCCAGCAGC TGCAGAAGGC GGCGATGCGG
ACGGCCCGGT TGCAGAAGGC CACAGCCGAC CTCGCCGAGG CGCTCACCGT CGATCAAGTG
GTCAACGTGA TGACCGAGAT CGGCAGTTCC GCGGTCGGGG TGTACCGCAC CGCGGTGGCC
CAGCTCACCC CGGAACGGCT CAAACTGCAG CTTCTCAACG ACGACGGCAT CCCGGACGTG
CCCGGAGCGC CGCCCCGCGA GATGCGGCTC GAAGACCTCA GCATGATGAC CCTGGCGGTC
CGCGAAAGCC GCACCATCAT CGCGGGGTCG CCGGAGGCGC TGCGGGAGGT CATGAAAGAC
CACGAGAACA CGCTCACCTA CCTGGAGCAC ACCGACGAGC GGGCCTGGAT CGCCCTGCCC
ATGATGAGCG CGGGCCGCCC GATCGGCGCG CTGCGCTTCT CTTTCCGGGA GCCCCGGGAG
ATCTCCGAAG AGGAACGGAC GTTCCTGGAA GCGCTTGCGG GGCAGTGCGC GCTGGCCTTG
GAACGCGCCG CCCTGTATGA GCGGGAGCAC AACACGGCCG AGGCCCTGCA GAAGAGCCTG
CTCCCCGAAG AACTCCCCGA AGTACGCGGA ATCCGGTTGG GGAAGCTCTA CAACCCCGGA
ACCAAATACG TGCAGGTGGG TGGGGACTGG TACGACGCGT TCCGGCTGAC CGACGGCCGG
GTGGCCGGCG TGCTCGGCGA CGTCATGGGC AAAGGGATCA AAGCGGCGAC AGGGATGAGC
CGGGTGCGTA ATGCGCTGCG CGCCTTGGCG TTCAGCATGC CCGAGCCCGC GGACGTCCTC
ACCGGTCTCG ACAACCTGTT CGCCGCGACT GAGAGCAACG ATCAGATTAC AACTCTGATC
TACTTCGTGC TGGACCCGGA AAGCGGCCAC GGTACCCTCG CCAACGCCGG GCACCTGCCC
CCGCTACTGA TCCCAGAAGA AGGGGAGCCT CGGCTCCTGG AAACCGAGCC GTCGACCCCG
CTCGGTATTC CTTTGCCGAG AGAACAGCAC AAATTTTTTG TCCCACCCGG TAACACCATG
GTCCTCTACT CCGATGGACT AGTAGAGAAC CGCAAGCGTG CTGCAGGAGC GGGTCTCGAA
GAACTCGTCA CCGCAGCTTC CCGAGCACCG GCGGAGGTGG TGGGCGATCC ACAGAAAATC
CTGAAGTACC TTGTGGAAAG GATGCTTGCG GGGCATGACC AGGATGATGA CGTAACCTTG
CTTGCCGTCC ACGTCCCCGC AACGTGA
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| Protein sequence | MSTETSVPFL RVSPMHPVDS ALLDTLLKEA PIGFAFFTPD FCFQRVNRTL ATIYGRSADE
CYGRTPDDVL PPPDAAEHKR ALSAVLAGES VVYSDHHLIG GTPRNPDEER HWALSWFPAY
DEGKITGVAL IAVDISERHK AELALRRSEE RYRALMQASN QIVWAAARDG RVDEDCPEWR
ALTGQSVEEY LAEGWLAAVH PDDRERVQLA WEDAVEDGTV FEENFRVRHH SGEYRHYRTR
AVPLTRDNQV VEWVGTHVDV TATDEVRQLL TQQLQKAAMR TARLQKATAD LAEALTVDQV
VNVMTEIGSS AVGVYRTAVA QLTPERLKLQ LLNDDGIPDV PGAPPREMRL EDLSMMTLAV
RESRTIIAGS PEALREVMKD HENTLTYLEH TDERAWIALP MMSAGRPIGA LRFSFREPRE
ISEEERTFLE ALAGQCALAL ERAALYEREH NTAEALQKSL LPEELPEVRG IRLGKLYNPG
TKYVQVGGDW YDAFRLTDGR VAGVLGDVMG KGIKAATGMS RVRNALRALA FSMPEPADVL
TGLDNLFAAT ESNDQITTLI YFVLDPESGH GTLANAGHLP PLLIPEEGEP RLLETEPSTP
LGIPLPREQH KFFVPPGNTM VLYSDGLVEN RKRAAGAGLE ELVTAASRAP AEVVGDPQKI
LKYLVERMLA GHDQDDDVTL LAVHVPAT
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