Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_2139 |
Symbol | |
ID | 3581982 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | - |
Start bp | 2503545 |
End bp | 2505395 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637685842 |
Product | RNA polymerase sigma factor |
Protein accession | YP_290195 |
Protein GI | 72162538 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGTCGAA ACGCTAGAGA AGGCACAGCG GCCCAGTACT ACGGTGGGCC TCCCGCGAGT GGGGGAATCG GGACCGAGCC GGGAGCTGGA CACCGTCCCC CCGACTCACC GGATCGTCGA GTCCAACAGT CTCGCCACAC GTCCGTTCGA GAGGTGTTTG TGTCACCTGC CAGTTCGACC CGCTCTAAGC AGCAGCCGGA GGCGCTGCAA GAGCCAGTCA TCCAGCAGCT GATCGAGCGT GGGCGGTCCC AGGGGTACCT TGAGCCCGAG GACGTGCGCC GTGCCTTTGA AGAGGCCGAG ATCCCGATGT CGCAGGCTCA GGCTGTGCTC CGCACCCTGA CCAAAGAAGG CGTCACCCTC ATCGTGAACG CGGCTGAGTC CGCACCGCCT CGACGCAAGT CCACCCGGCG TAAGACAACC TCCGCCTCTC GGGCGGCGGC TCAAACCAGC ACCACTCGGG CCAAACGCAC GGCGGCAGCC CAAGAGAAGC CCGAGGCCGC GACTGCCGTG AAGAAGAGCA CGGAAGACGC GGAGGAGACC ACCACAGCGT CCAAGAAACG CACGACCAAG GCCGCCAGCA CGAAATCCAA GACGACCGCC AAGCGCAGCA CGGCCAAGAA GACCACGACC AAGTCGACCA CGAAGAAGAC CGCCAAGACC GCGACCAAGA AGAAGACGGC TGCGACAGCG GCCACCCCCG CGGTCGAAGA GGAGCTCGGC TTGGAGGCGA CCGACCTCCT CGAGGACAAC TTCGAGGAGA CCGGCGCCGA CCTGGAACTG GTGGACGACA CCGACGACGA GGTCGTCGAG CTTGAGGAGA CCACTCCGGC GAAGCGGAGC CGGGACCTCC CCGAGAAAGC GGACGCCGAC GACGATGACT CCTTCGTCCT CTACGACGAC GACGATGACG CGCCGGCAGC GCAGGTCGTC GCGGCGGGAG CAACCGCTGA CCCGGTGAAG GACTACCTCA AGCAGATCGG CAAGGTTCCC CTCCTCAACG CGGAGCAGGA GGTGGAGCTC GCCAAGCGGA TCGAGGCCGG TCTGTTCGCT GAGGAGAAGC TCTCCAAGAA GGGCCACGAG CTCACCCCGG AGGAACGGGA GGAGCTGGAG TGGATCGCTG AAGACGGCAA GCGCGCCAAG AAGCACCTGC TGGAGGCGAA CCTGCGCCTG GTGGTGTCCT TGGCCAAGCG CTACACCGGC CGCGGCATGC TCTTCCTCGA CCTGATCCAG GAAGGCAACC TCGGCCTCAT CCGGGCGGTC GAGAAGTTCG ACTACACCAA GGGCTACAAG TTCTCCACCT ACGCAACCTG GTGGATCCGG CAGGCCATTA CCCGCGCGAT GGCCGACCAG GCCCGGACGA TCCGTATCCC GGTGCACATG GTGGAGGTCA TCAACAAGCT TGCCCGGGTC CAGCGCCAGA TGCTGCAGGA CCTGGGACGC GAACCGACTC CGGAGGAGCT CGCCAAGGAG CTCGACATGA CCCCGGAGAA AGTTGTCGAA GTCCAGAAGT ACGGGCGCGA GCCGATTTCC TTGCACACCC CGCTCGGCGA GGACGGCGAC AGCGAGTTCG GCGACCTGAT CGAGGACTCC GAGGCGATCC AGCCGGGCGA GGCGGTCAGC TTCACCCTGC TGCAGGAGCA GCTGCACTCG GTGCTCGACA CCCTGTCCGA GCGGGAAGCA GGCGTGGTGT CGATGCGCTT CGGGCTCACC GACGGCCAGC CCAAGACTTT GGACGAGATC GGCAAGGTCT ACGGCGTGAC CCGGGAGCGG ATCCGCCAGA TCGAGTCCAA GACCATGTCC AAGCTGCGCC ACCCGTCCCG TTCCCAGGTG CTGCGCGACT ACTTGGACTA A
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Protein sequence | MCRNAREGTA AQYYGGPPAS GGIGTEPGAG HRPPDSPDRR VQQSRHTSVR EVFVSPASST RSKQQPEALQ EPVIQQLIER GRSQGYLEPE DVRRAFEEAE IPMSQAQAVL RTLTKEGVTL IVNAAESAPP RRKSTRRKTT SASRAAAQTS TTRAKRTAAA QEKPEAATAV KKSTEDAEET TTASKKRTTK AASTKSKTTA KRSTAKKTTT KSTTKKTAKT ATKKKTAATA ATPAVEEELG LEATDLLEDN FEETGADLEL VDDTDDEVVE LEETTPAKRS RDLPEKADAD DDDSFVLYDD DDDAPAAQVV AAGATADPVK DYLKQIGKVP LLNAEQEVEL AKRIEAGLFA EEKLSKKGHE LTPEEREELE WIAEDGKRAK KHLLEANLRL VVSLAKRYTG RGMLFLDLIQ EGNLGLIRAV EKFDYTKGYK FSTYATWWIR QAITRAMADQ ARTIRIPVHM VEVINKLARV QRQMLQDLGR EPTPEELAKE LDMTPEKVVE VQKYGREPIS LHTPLGEDGD SEFGDLIEDS EAIQPGEAVS FTLLQEQLHS VLDTLSEREA GVVSMRFGLT DGQPKTLDEI GKVYGVTRER IRQIESKTMS KLRHPSRSQV LRDYLD
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