| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2011 |
|---|
| Symbol | |
|---|
| ID | 3580884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 2350166 |
|---|
| End bp | 2351668 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637685704 |
|---|
| Product | putative cationic amino acid transporter |
|---|
| Protein accession | YP_290067 |
|---|
| Protein GI | 72162410 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | [TIGR00909] amino acid transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGTATCT GGCGCACGAA GAGCATCGAA CAGTCCATCC GGGACACCGA CGAACCCGGG
TATCGGCTCC GCCGGGACCT CAACGGCTTC GACCTGATCG TCTTCGGCAT CGGAGTCATC
ATCGGAACCG GCATCTTCGT CGTCACGGGA CGGCAGGCCG CCGAGAACGC CGGCCCCGCC
ATCGTCCTGT CCTTCCTCGC TGCCGGAGCT GTATGCGCAC TGGCTGCCAT GTGCTACGCC
GAATTCGCCT CCACCGTGCC GGTCGCCGGG AGCGCGTACA CGTTCGGCTA CGCCACGCTA
GGGGAATTCG TCGCCTGGAT CATCGGCTGG GACCTCATCT TGGAGTTCAC CCTGGCGGCC
TCTGTGGTCT CCGTGGGCTG GTCGGAATAT GCCGGAGACC TCCTCGCCCT GCCGACCACG
GTCACCCTCG CCGGTCTCCC GGTGAACCTC GGCGCCGTGG CCATCGCCGT CCTCCTGGGC
CTTGTCGGCA TGCTGGGAGC CAAACTGTCG GGCCGGGTCA CCGCGGTCGT GGTGGCGATC
AAAGTCGGCA TCGTGCTCTT CATCATCGCC GTGGGCGCAG CCTACGTCGA CCCCGCCAAC
TGGACGCCGT TCATCCCACC CGCGCAGCCC GCGGCCGCGG ACACCACCGG GGTGAGCGAT
GCCACGCTCA CCCACGTCCT CTTCGGCTTG GAACCCACCT CCTTCGGCCC GTGGGGAGTG
GTCGCCGCCG CATCAGTGGT GTTCTTCTCC TTCATCGGCT TCGACATCGT CGCCACCACC
GCTGAAGAAA CCCGCAACCC GCGGCGGGAC ATCCCTGTCG GCATCTTCGG CTCCCTGCTC
ATCGTCACCC TGCTGTACAT GGCGGTGGCC GCAGTCGTCA CAGGGATGCG CCCGTACACG
GAACTCAACG TGACCGCACC CCTCTCCGAC GCCTTCCGCT CTGTCGGCGC CGACTGGGCG
GCGACCCTGA TCTCGCTGGG CGGGGTCATC GGCATCACCA CCGTCATCCT GGTGCTGATG
ATGGGTCAGG CCCGGGTCGC GTTCGCCATG TCCCGCGACG GGCTGCTGCC CCGAGCGCTC
TCCCGTATCC ACCCGCGGTT CGGCACCCCG TATGTGACCA CCCTGCTGAC CACCGCGGCC
GTGGCACTGC TCGGCGGCCT CGTTCCCATC AGCACGCTTG AAGAGATGGT CAATATCGGC
ACGCTGTTCG CGTTCGTCGT AGTGTCTGTG GGCGTGGTCG TCCTGCGTTC TCTCCGCCCC
GACCTGCCGC GGGCATTCCG CGTGCCCTGG TCTCCGGTAC TGCCGCTGCT GGCCGCGCTC
TCCTGCCTCT GGCTGATGCT CAACCTGACC GCGCTCACCT GGATCCGGTT CGCGGTATGG
CTCGTGATCG GGGTCGCCAT CTACTTCCTC TACGGAATCC ACCACAGCAG GCTCGCCGCG
CCTCCCGCAC AGCCCAGCGG TGAAGAAGGA GAAGGGGTGG GCGAGGGGTT TCTCGGCGCA
TAA
|
|---|
| Protein sequence | MSIWRTKSIE QSIRDTDEPG YRLRRDLNGF DLIVFGIGVI IGTGIFVVTG RQAAENAGPA
IVLSFLAAGA VCALAAMCYA EFASTVPVAG SAYTFGYATL GEFVAWIIGW DLILEFTLAA
SVVSVGWSEY AGDLLALPTT VTLAGLPVNL GAVAIAVLLG LVGMLGAKLS GRVTAVVVAI
KVGIVLFIIA VGAAYVDPAN WTPFIPPAQP AAADTTGVSD ATLTHVLFGL EPTSFGPWGV
VAAASVVFFS FIGFDIVATT AEETRNPRRD IPVGIFGSLL IVTLLYMAVA AVVTGMRPYT
ELNVTAPLSD AFRSVGADWA ATLISLGGVI GITTVILVLM MGQARVAFAM SRDGLLPRAL
SRIHPRFGTP YVTTLLTTAA VALLGGLVPI STLEEMVNIG TLFAFVVVSV GVVVLRSLRP
DLPRAFRVPW SPVLPLLAAL SCLWLMLNLT ALTWIRFAVW LVIGVAIYFL YGIHHSRLAA
PPAQPSGEEG EGVGEGFLGA
|
|---|
| |