| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1917 |
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| Symbol | |
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| ID | 3580825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 2242018 |
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| End bp | 2243931 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637685609 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_289973 |
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| Protein GI | 72162316 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACGCTGC TCGACTCGGT GCACAATCCA GACGACCTGA AAAAACTCCC CGACTCCCAG
CTTCCCCAAT TGGCGGCGGA AATCCGGGAG TTCCTCATTT CCCAGGTCGC CCGAACCGGT
GGTCACCTCG GCCCCAACCT GGGTGTCGTC GAACTCACCA TCGCCTTGCA CCGCGTGTTT
GACTCGCCGC GCGATCCCAT CCTGTTCGAC ACCGGCCACC AGGCGTACGT CCATAAGATC
CTGACCGGCC GGAAAGACTT CTCCAAACTG CGGAAAGAGG GCGGCCTCTC CGGATATCCG
TCCCGCGCCG AGTCCGAGCA CGACTTTATT GAGAATTCGC ACGCCTCCAC CGCACTGTCC
TACGCTGATG GGCTCGCCCG CGCCTACGAA CTGCAGGGGA TCACCGACCG CACCGTGGTC
GCCCTGGTCG GCGACGGCGC GCTCACCGGC GGAATGGCGT GGGAAGCGCT CAACAATATC
GCCGAAGGGA AAAACCGCCG GATCGTCATC GTCGTCAACG ACAACGGCCG CTCCTACTCG
CCGACGATCG GCGGGCTCGC CGAGCATTTC GCCAACCTGC GTATGACGCG CGGCTACGAG
CAGATGCTGG CGACCGCGAA GAACGCGATC AACCGGGCGC CGGTGGTCGG CCCGCCGCTG
TACGACGCGC TGCACGCGTT CAAGAAAGGC CTCAAGGACG CTATTCAGCC GCAGATGATG
TTCGAAGACC TGGGGCTGAA GTACGTCGGG CCGATCGACG GGCACGACGT GGCAGCGGTG
GAGCGGGCGC TGCGCCGGGC CCGCGATTTC GGGGCGCCGG TCATCGTGCA CGTCCTCACC
CAGAAGGGCA AGGGGTACGC GCCCGCGGAG AACCACGACG AAGACCAGTT CCACGCCCTC
GGCGCGTTCG ACGTGGCCAC GGGACGCCCG CAGTCCACGC CGGGCCTGAA GTGGACGTCG
GTGTTCAGCG ACGAGATGGT GCGGATCGGC GCGGAACGCG AAGACGTGGT CGCGATCACC
GCGGCCATGC TGCACCCCAC CGGCCTCGCC GCCTTCGCCG AGGCCTACCC CGACCGGGTC
TTCGACGTGG GCATCGCGGA ACAGCACGCT GCGACGTGCG CAGCCGGGCT GGCCATGGGT
GGCCTCCACC CGGTCGTCGC GGTCTACGCC ACGTTCCTCA ACCGCTGTTT TGACCAGGTC
CTCATGGATG TGGCGCTGCA CCGCCAGCCG GTCACGTTCG CGCTCGACCG GGCGGGCATC
ACGGGAGACG ACGGTGCGAG CCACAACGGG ATGTGGGACC TGTCCATCCT GCAAGTCGTC
CCCAACCTGA GCATCGCGGT GCCGCGCGAC GCGGTGCGGC TGCGGGAACT GCTGCGCGAG
GCGATCTCCA TCGACGACGG GCCCACCGTG GTGCGTTACC CCAAGGGCGT GGTGCCCCCC
GCCATCCCCG CGGTCGACCA GATCGGCGGG ATGGACGTGC TGCGGCGTCC TGCGAGCGGC
ACCGAGGCCC CGGACTTGCT GCTGGTCGCG GTCGGGCCCA TGGCGCAGAC GTGCTGCGAG
GTCGCCGACC GGCTGGCCGA CCAGGGGATC GGGGTGACCG TCGTGGACCC GCGCTGGGTC
AAACCGTTGG ACCCGGCGTT GGTGTCGGAA GCCGCCCGGC ACAGCGTGGT CGCCGTAGTC
GAGGACAACG GCCGGGTGGG CGCGGTCGGT GACGCGGTGG CCCGCGCCCT GCGCGACGCC
GACCTCGACA TTCCGGTGCG CACGTTCGGG ATCGAGCAGC GCTTCCTGGA GCACGCCAAA
CGCGACCGTA TCCTCGCCCA GATGGGGTTG GACGCGCAGG GACTAGCGCG CAAACTCACC
GAGATCGTGG CCCAGCGCGC GGAGCAGTCC CTGGAGGACG AGCCGGCGTC CTGA
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| Protein sequence | MTLLDSVHNP DDLKKLPDSQ LPQLAAEIRE FLISQVARTG GHLGPNLGVV ELTIALHRVF
DSPRDPILFD TGHQAYVHKI LTGRKDFSKL RKEGGLSGYP SRAESEHDFI ENSHASTALS
YADGLARAYE LQGITDRTVV ALVGDGALTG GMAWEALNNI AEGKNRRIVI VVNDNGRSYS
PTIGGLAEHF ANLRMTRGYE QMLATAKNAI NRAPVVGPPL YDALHAFKKG LKDAIQPQMM
FEDLGLKYVG PIDGHDVAAV ERALRRARDF GAPVIVHVLT QKGKGYAPAE NHDEDQFHAL
GAFDVATGRP QSTPGLKWTS VFSDEMVRIG AEREDVVAIT AAMLHPTGLA AFAEAYPDRV
FDVGIAEQHA ATCAAGLAMG GLHPVVAVYA TFLNRCFDQV LMDVALHRQP VTFALDRAGI
TGDDGASHNG MWDLSILQVV PNLSIAVPRD AVRLRELLRE AISIDDGPTV VRYPKGVVPP
AIPAVDQIGG MDVLRRPASG TEAPDLLLVA VGPMAQTCCE VADRLADQGI GVTVVDPRWV
KPLDPALVSE AARHSVVAVV EDNGRVGAVG DAVARALRDA DLDIPVRTFG IEQRFLEHAK
RDRILAQMGL DAQGLARKLT EIVAQRAEQS LEDEPAS
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