Gene Tfu_1870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_1870 
Symbol 
ID3579549 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand- 
Start bp2192529 
End bp2193194 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content68% 
IMG OID637685562 
Productisochorismatase 
Protein accessionYP_289926 
Protein GI72162269 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1535] Isochorismate hydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.408465 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCTGC CAGCCATCAC CCCCTATCCG CTGCCCACCG TGGACCAGTT GCCCGCCAAC 
CGGGCAGAGT GGCAGATCAC CCCTGCCCGT GCGGTGCTCC TCGTCCACGA CATGCAGCGC 
TACTTCCTGC GCCCCTACGC AGAGAGCGCG GATCCGCTGC GGGGCGTGCT CACCAACATC 
TCCACCCTGG CCGACACCTG CCGGACCCTC GGAATCCCTG TGATCTACAC CGTAAAACCC 
GGTGGTATGG ACCCGGCACA ACGCGGCCTG GAACTCCACT TCTGGGGGCG CGGCATGAGC 
GCTACCGACG AACACACGGC CATCGACACC CGGATCGCCC CCCGACCCAC CGACCTGGTG 
GTCGTCAAAG CACGCTACAG CGCATTCGTC GGCACCGACC TGGCAGCCCG CCTCGCCGAC 
CTCAACCGGG ACCAGATCAT CGTCACCGGC GTCTACGCCC ACATCGGGTG CCTGCTCACC 
GCTGCCGACG CGTTCATGCG CGACATCCAA CCGTTCCTCG TCGCCGACGC GACCGCGGAC 
TTCAGCGCCG AGGAGCACCG GTTCGCCCTG ACCTACGCGG CCACCCGCTG CGCAATGGTG 
ACCAGCACAG CAGATGCGCT CGCCGCGCTG CGTTCCGCCC GCGTCGACGT GGAAACCGGA 
GGCTGA
 
Protein sequence
MSLPAITPYP LPTVDQLPAN RAEWQITPAR AVLLVHDMQR YFLRPYAESA DPLRGVLTNI 
STLADTCRTL GIPVIYTVKP GGMDPAQRGL ELHFWGRGMS ATDEHTAIDT RIAPRPTDLV 
VVKARYSAFV GTDLAARLAD LNRDQIIVTG VYAHIGCLLT AADAFMRDIQ PFLVADATAD 
FSAEEHRFAL TYAATRCAMV TSTADALAAL RSARVDVETG G