Gene Tfu_1787 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_1787 
Symbol 
ID3580467 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand+ 
Start bp2088329 
End bp2089048 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content69% 
IMG OID637685481 
ProductGntR family transcriptional regulator 
Protein accessionYP_289845 
Protein GI72162188 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.0160831 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGAGTG AGAGTCTGGC CGACCGCCTG GCCGACCGCC TGCTCGACCA GGTGGTGCGC 
GGTGAACTCG CCGTGGACGA GGCCCTGCCC TCGGAAGCCG AGATCGCCGC AGCAGCCGAC 
GTCAGCCGTC TGACCGTCCG CGAGGCGGTC AAAGTGTTGC GGACCAAGAA CATCGTCCGG 
GTCAAACGCG GTCGGGGAAC CTACGTCAAC GCACCCGAGC ACTGGACTGA CCTGGAACTC 
ATCCTGCGCA TGGCGCAACG CCGCAGCGGG GCAGGCGCCG CAGCACTCGG ACTGCTGGAA 
GTACGGCGCA TCCTGGAAGC CGGAGCCGCC GAACTCTGCG CCCAACGCCG CAGCGACGCC 
GACCTCGCCC TGTTGACCAC ACACGTCGCG GAGATGGACA AAGCCATCGC CGCGGACGAC 
GCCTCCACGT TCGCCCGCGC TGAAACCGCC TTCCACGAAA CCATCGTGCG GTCCTGCGGC 
AACGTGTTCA TCCCAGCGAT CTGCGCCCCC GTGGACCGGC TACTGCTGCA CCTGCACGCC 
CGGACCGCAA CCATCGCCCA CATCCGGGTC CGCGCCCAAA GCCACCACCG CCGGATCCTG 
TCCGGAATCG CCGCCGGCTC CCCTGCCGCA GCCCGGGACG CGATGCGCGC CCACTTCGAC 
CAGCTCGCTG AAGACCTGCT GCGCCACGTC GTCGACCGCT GCGGTGTCAG CGAACCGTAG
 
Protein sequence
MGSESLADRL ADRLLDQVVR GELAVDEALP SEAEIAAAAD VSRLTVREAV KVLRTKNIVR 
VKRGRGTYVN APEHWTDLEL ILRMAQRRSG AGAAALGLLE VRRILEAGAA ELCAQRRSDA 
DLALLTTHVA EMDKAIAADD ASTFARAETA FHETIVRSCG NVFIPAICAP VDRLLLHLHA 
RTATIAHIRV RAQSHHRRIL SGIAAGSPAA ARDAMRAHFD QLAEDLLRHV VDRCGVSEP