| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1679 |
|---|
| Symbol | |
|---|
| ID | 3580860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 1953015 |
|---|
| End bp | 1953752 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637685373 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_289737 |
|---|
| Protein GI | 72162080 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTACC ACCCCACGAC GACTCCCCCT GCCGCCATCC TGTTCAGCGT GGACGACACC
CTGGTGGACG ACTACAACGC TGTCTCTCAA GGGGTGCGCG TCCTCATGGA GCGCCTTGGC
CACCCCAGCT TCTCGGCTGC TCGCGTCCTC TGGGACGTTC AGGGCATCCT GTCCACGAGC
GCCTACCGTG CTGGGCGGAT CCCCTTGGCG GAGAAGCGGC GGCAGCTCGT CCGCGCGTTA
GCTACCCAGG CAGGGCACTC CCACATCTCC GACCAGCACT GTGATGAGCT GTACCAGCGC
TACTTAGACG CGCACCGCGC TGCCTGGCGG ACCTTCGACG ATGTCGCCCC TACCCTCACC
CAGTTGGCAC AGCGCAACAT CCGCCTCGGG GTGATCACCA ATGGCGACCA GAACCGGCAG
CACGACAAGC TCTCCACGCT CAACCTCGCC CACCACTTCG GGGCGGTCGT GTGCGCCGAG
GCGGCAGGGA CCAGCAAACC CGACCCGCGG ATCTTCCTGC TGGCCTGCCA ACAGCTCGGG
GTAGCCCCCC ACCAGACGTG GTATGTGGGC GACCAGATGT ATGAGGATGC GATCGGGGCG
CTCAACGCGG GCCTCTACCC GGTGCTGTGC GACCGGCACC GTCTGCTCCC TGCCACCGAG
ATCACCACGA TCCACACGTT GACGGAGCTG TCCGCGCTGA CCACGGGCAC GCGTTCTCCC
GGAGCAAGCC TGCTGTGA
|
|---|
| Protein sequence | MPYHPTTTPP AAILFSVDDT LVDDYNAVSQ GVRVLMERLG HPSFSAARVL WDVQGILSTS
AYRAGRIPLA EKRRQLVRAL ATQAGHSHIS DQHCDELYQR YLDAHRAAWR TFDDVAPTLT
QLAQRNIRLG VITNGDQNRQ HDKLSTLNLA HHFGAVVCAE AAGTSKPDPR IFLLACQQLG
VAPHQTWYVG DQMYEDAIGA LNAGLYPVLC DRHRLLPATE ITTIHTLTEL SALTTGTRSP
GASLL
|
|---|
| |