Gene Tfu_1643 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_1643 
Symbol 
ID3580479 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand
Start bp1910168 
End bp1911859 
Gene Length1692 bp 
Protein Length563 aa 
Translation table11 
GC content66% 
IMG OID637685337 
Productparallel beta-helix repeat-containing ricin B lectin 
Protein accessionYP_289701 
Protein GI72162044 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGCCCC TCCCGTCCGG CGCAGTGCCG GACATGATCC CCACGGAGGT ACACGTGTCC 
CTCACCCCCT CCCTAGTCCA CCGGAGAGAA TGGCCCTCAT CGGTGCGACT CGTGATGACC
TGCGGCGGCG TTGTTGCGCT CCTCGCCGCG CTGCTCACGG TTGTCGCCCG CCCGGCTATG
GCAGCGACGA TCGACACCGG CGCCTACTAT GTGCTGGTCA ACCGGCACAG CGGCAAAGCC
ATGGACGTGT GGGAATGGTC CACCGCCAAC GGCGGCGAGA TCCGCCAATA CGACAACCTG
GGCGGGTACA ACCAGCAGTT CCGGTTCGTC CCCGCCGGCG ACGGCTACTA TGCGCTGGTC
AACCGGCACA GCGGCAAAGC CGTCGACGTG TGGGAACGCT CCACCGCCGA TGGCGCAGAA
ATCCGCCAGT ACGACCACCA CGGCGGGTAC AACCAGCAGT TCCGGGTCGT CGACTCCGCG
GGCGGCGACA TCCGGCTGAT CAACCGCAAC AGCGGCAAAG CCCTGGAGGT CTGGGAATGG
TCCACCGCCA ACGGTGCCCG CATCTCCCAG TACACCGACC ACGACGGCGC CAACCAGCGC
TGGCAGCTCA TCAAAGTCAC CGACAACGGC GGCGGCTCCG ACACCTGCGG TAGCGGCTCC
TACCACGCCG AAGTCACGAA GAACGGCACC ACGTGGACCG CGCGCAAAGG CGGCAGCACC
CTCTACACCG GAAGCGACAT GCTCCAGGCG ATGCGGGCAG CGGTCAACAG CCTCACCCCC
GGACGCACTC ACAAGGAGCG GGTGGTGGTG CGCGGCTCCG GTTCGATGAG CGCGGGAAGC
TCGCTCGACC TGCCCAGCTA CACCGTGCTG GACGTGTGCG GCACGATCAA CGTGACCGGC
AGCCCGTCAG CCAACCACGC GGCAGTGCGG ATCCGCAACG CCCACGACGT TGAGGTCCCC
AACATCAGCG TCACCGGCAA CCCCTACTTC GGCATCTTTG TGCGCAACGC GTCCAACGTC
CACTTCGGCC AGGTGGACCT GCGGCTCTCC GGCGGCTTGG GCATGCGCAT CGACAACCAT
GACAACCGGA GTGTCCGCAC CCGCAACGTC AGCATCGACC ACGTCTACGT GTCGGGCACG
GGGAATCACG GCGTGGAAAC CTACGGCGTG GACGGCATCA CGATCGGCAC TGTCGTGGCA
CGCAACGTCG CCTACTCCGG ACTGCTGCTC AACGACACCA TCAACGCGAA CGTGGGCCTG
GTGGACGCGG AGAACGCGGG AACCGGCACC GGGTACGCGG CGTTCCGCAT GGCCAACCGC
AACGGACGGA TCGGCGACAG CTACCCCGTC AACATCCGCG TGGGTGAAGT GCGGGCCCGC
GGCGGCGGAC GCGGCGTCTT CTGCGTCTCC GAAAGCGGCG GTGCGGTCAT CGACCGGATC
GACTTGGCCA ACACCGGAAA CAACGCCATC CTCATCGAGA ACTGCTACAA CGTCACCGTG
GCCGGACAGT CCGGAACGGT GCGCGACTCC GGGGAGATCC GTATCGCTGC GCGGTCGGAG
TTCCCCAACA CCGCCAACGT CACCATCCAG AACCTCACGG TGACCAACAC CGGTATCCGG
GAGAACCCCT GCGGTATCAA CATCACCTTC CGCAACATCA CCCGGATCAA CAGCAGCTAC
AACGTCTGCT GA
 
Protein sequence
MRPLPSGAVP DMIPTEVHVS LTPSLVHRRE WPSSVRLVMT CGGVVALLAA LLTVVARPAM 
AATIDTGAYY VLVNRHSGKA MDVWEWSTAN GGEIRQYDNL GGYNQQFRFV PAGDGYYALV
NRHSGKAVDV WERSTADGAE IRQYDHHGGY NQQFRVVDSA GGDIRLINRN SGKALEVWEW
STANGARISQ YTDHDGANQR WQLIKVTDNG GGSDTCGSGS YHAEVTKNGT TWTARKGGST
LYTGSDMLQA MRAAVNSLTP GRTHKERVVV RGSGSMSAGS SLDLPSYTVL DVCGTINVTG
SPSANHAAVR IRNAHDVEVP NISVTGNPYF GIFVRNASNV HFGQVDLRLS GGLGMRIDNH
DNRSVRTRNV SIDHVYVSGT GNHGVETYGV DGITIGTVVA RNVAYSGLLL NDTINANVGL
VDAENAGTGT GYAAFRMANR NGRIGDSYPV NIRVGEVRAR GGGRGVFCVS ESGGAVIDRI
DLANTGNNAI LIENCYNVTV AGQSGTVRDS GEIRIAARSE FPNTANVTIQ NLTVTNTGIR
ENPCGINITF RNITRINSSY NVC