| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1616 |
|---|
| Symbol | |
|---|
| ID | 3581103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 1873997 |
|---|
| End bp | 1875649 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637685310 |
|---|
| Product | alpha-L-arabinofuranosidase |
|---|
| Protein accession | YP_289674 |
|---|
| Protein GI | 72162017 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3507] Beta-xylosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.347525 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCTC CCCAAGTCAC GTCCTCCCCG TCTCGTGAGG AACCGAGGGC GGGCACGATT
CGCAACCCGG TACTCACCGG CTTCTACCCC GACCCTTCCA TCCTGCGAGT GGGCGACGAC
TACTACATGG CGACCTCCAC ATTCGAGTGG TATCCCGGAG TGACCCTGCA CCATTCCCGG
GACTTGGTGC ACTGGCGCCC CCTGGGCGGT GCACTCACCG AGACTCGACT GCTGGACCTG
GCTGGACGGC GGGACGGCGC AGGGGTGTGG GCACCCGCCC TGTCCTACCG GGACGGACTG
TTCTTCCTCG TCTTCACGAA CGTCGCAAGC TACAGCGGCA ACTTCTGGGA CGCGCCCAAC
TACGTCACCA CCGCTCCCGA CATCACCGGC CCCTGGTCCG ACCCGGTGCC GCTCCACTCC
CTCGGCTTCG ACCCGTCGCT GTTCCACGAC GACGACGGAC GGAGCTGGCT GCTCAGCACC
TCCATGGACT GGCGGCCGGG ACGGGACGCG TTCGGTGGCA TCGTCGCCCA AGAGTTCTCG
GTGCGCGACA TGAAACTCGT CGGTGAACCG GTGATCATCT TCACCGGCAC CGAAGCCGGC
GTGACCGAGG CGCCCCACAT CTACAAGCGC GACGGCTGGT ACTACCTGGT CACCGCCGAA
GGCGGCACCC AGTGGGAGCA CCAGGTCACC GTGGCCCGCT CCCGCTCGGT CACCGGACCC
TACGAGGTCG ACCCGGCCGG GCCAGCCCTC ACCTCGCGGC ACGTTCCCGA AGCGCCGCTG
CAGAAGGCCG GGCACGCGAG CATGGTCGAA ACCCAGCACG GCGAATGGTA TTTCGCGCAC
CTGACCGGAC GCCCGATGCC GCCCAGCGGC CGGTGCGTCC TCGGTCGGGA GACCGCGTTG
CAGAAGATCG AATGGTCTTC AGACGGGTGG CCCCGCGTCC GCAACGCGGA ACCGCTGCTG
GAAGTGCCGG GACCGCGCGG CCTGGCCCCG CACCCGTGGC CGCAGCCGTC GGAGACCGAC
CACTTCGACG ACCCCACGCC GCGGCCCGAG TGGAGCACGC TGCGCCGGCC CTTCGACTCC
TCCTGGGTCT CCCTCACCGA ACGGCCCGGC TACCTGCGGA TCCGCGGCGG GCAGTCGCCT
GCTGGCCTGC ACGAGCCCAG CCTGGTGGCA CGCCGACTGC AGCACCGCGC CTGCATCTTC
GAAGCCTGCC TGGAGTTCAA GCCGGAAGAC TTCCGGCAGA TGGCAGGCAT CACCGCCTAC
TACAACACCC GCCAATGGCA CTACCTGCGG ATCAACCGCG ACGACCGGGG CGGCGTGTTC
GCGGGCGTGC TCACCAGCGA CCGCGGCATC ATCCGCGAAG TGGGACGGCG GATCAGCGTC
ACCGACTGGC CGAAGGTCTT CCTGCGCGCC GAAATCGACC GGAACGACCT GCGCTTCGCC
GTCTCCTCCG ACGGCAGCAC GTGGGCTGAC ATGGGGGTGC GTCTGGACAT GAGCATCCTG
TCCGACGAGT ACGCCGAGGA ACGGTTCGGC AACGACCCCA TCATGTGGGG TTTCACGGGG
GCGTTCCTCG GCCTGTGGGC CCACGACATG ACCGGGGCAG GGCTCCCTGC CGACTTCGAC
TTCTGCACCT ACCGGCCTCA GTCCCCCTCC TGA
|
|---|
| Protein sequence | MTSPQVTSSP SREEPRAGTI RNPVLTGFYP DPSILRVGDD YYMATSTFEW YPGVTLHHSR
DLVHWRPLGG ALTETRLLDL AGRRDGAGVW APALSYRDGL FFLVFTNVAS YSGNFWDAPN
YVTTAPDITG PWSDPVPLHS LGFDPSLFHD DDGRSWLLST SMDWRPGRDA FGGIVAQEFS
VRDMKLVGEP VIIFTGTEAG VTEAPHIYKR DGWYYLVTAE GGTQWEHQVT VARSRSVTGP
YEVDPAGPAL TSRHVPEAPL QKAGHASMVE TQHGEWYFAH LTGRPMPPSG RCVLGRETAL
QKIEWSSDGW PRVRNAEPLL EVPGPRGLAP HPWPQPSETD HFDDPTPRPE WSTLRRPFDS
SWVSLTERPG YLRIRGGQSP AGLHEPSLVA RRLQHRACIF EACLEFKPED FRQMAGITAY
YNTRQWHYLR INRDDRGGVF AGVLTSDRGI IREVGRRISV TDWPKVFLRA EIDRNDLRFA
VSSDGSTWAD MGVRLDMSIL SDEYAEERFG NDPIMWGFTG AFLGLWAHDM TGAGLPADFD
FCTYRPQSPS
|
|---|
| |