Gene Tfu_1592 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_1592 
Symbol 
ID3581635 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand
Start bp1833672 
End bp1835321 
Gene Length1650 bp 
Protein Length549 aa 
Translation table11 
GC content64% 
IMG OID637685287 
ProductCRISPR-associated Cse1 family protein 
Protein accessionYP_289651 
Protein GI72161994 
COG category 
COG ID 
TIGRFAM ID[TIGR02547] CRISPR system CASCADE complex protein CasA/Cse1 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.440854 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTGTCGG TTGCCCTGTG TTTTCTTGTG GGAGGAGCCA TTCCTTCACC GCCGTCATTT 
GATGTGACCA TCGCTCCTTG GCTGATTGCG CGCAGCCGCG ACGTCCTGGC CGCACCCGAA
ATGCTGGGAC TGCGTGACGT TCTCATCCGC TCCCACGAAC TCTCCGACGT GGAGATTCCG
CTTCCGCCTG GCGCGGCAGT ACTGTGGCGG ATACTCGCAC TGATCACCGC CCGCATCACC
GGCCTCGACC AGCCGCCAAA CAAGAATCCG AAGCGGAAAT GGCAGGCTCG CCGCAGCCAG
ATCCTCAGCA AAGGACGACT CGACCCGGAA GCGGTCGACG CCTACTTCGC CGACTACTCG
GAGCGCTTCG ACCTGTTCCA CCCTGAGCGG CCCTGGTTGC AAGATCCTCG CCTGCGTGAA
GAGTGTCCGA AAACCTCGGG TGTCAACAAG CTGGCATGGG GGCGCACCGC GGGAGAGAAC
CAGGTGTGGC TCGGCGGCCA CCACCATGAC CTCGACCCGC ACCCCCTCGA CTCCGCTGAG
GCTGTCTGGC ACCTGCTGGC AACTCTCGGC TACGGGCCTT CAGGGATGTG CACGGCTCGC
GTTGTCCGGG GAAGAAGCGA ACGCAACGTC ACCGCGGGGC CGCTGCGCGG CACCGTCTCC
TACCACCCGT TGGGCCGCAC CCTGTTCGAA AGCCTGATCC TCAACATTCC CTACCCCGGC
ACTGGTGCAG CCGACCTCGC CTTCTGGGAA CAGCCAGAGC TCAACGACCC GCTCGGTCTT
CCCGAAGAAT CCGCGGGACT CGCCGGGATT CTGAGGCTCG ACCACTTCCG CCATGCTGTC
CTGCTGCACC CCTCGCCAGA TGGTTCACAC GTCGTGGATG CATGGGTGAC CTGGGCGTGG
CGGGAACGCA ACATTTCGCC AGAACTCGAC CCTTACCTCA TCTACCAGAC AAGCAAGGAA
GGCCGTGTCT ATCCGCGGCC AGCCGAAGCG GAACGGGCCA TATGGCGGGA CCTCGACGCC
TTGCTGCACT ACGGCGAAGA CGGCAACTAC CGGCCGACAA TTTTGGACAA CTGCACGCCT
TTGGCGCAGG TTCCCCAAGA AGTCCTGGAC TCCCTGCGGC TGCGCGCCTT CGGGTTCGAC
CAGGACGGTC AGGCCCGTGA CAAACAGTGG TTCACCGCCA CCACCCCGGC CGTGCTGCGC
TGGCTAGCAG ACCGGGAAAC CGACGACAAC GAGAACGCCC GAATCGTGCG TCGTATCACC
CTGGCTCGCA AAGCCGCGGA AGCACTCGGC CGCCGCCTAG AAAAAGCGTG CAAAGAAGCG
TGGAAGGAAA GCAACAGCCC TAGCTCCACT AGCTCCGGCA CCAACGCTAA GACCGAGACC
GGTGTCGGAC CCTGGGTGCA GCACGGCATG AGCCGCTACT GGGCGAAAGC CGAGCCGGTC
TTCTGGAACA TCGTCTACGA CCGGCCCGCT CAAGGCTACA CCCCCGGCAT GGCAGGCCCC
GGAAACGCCT TCAACCTGGT CGCGTTAGCT GCCTACGACG AGGTGACCGG TCCCTACTGT
GAACGGCCCC GCGTGGCCAA AGTCGTGGAG CGGCACCGCA GCACCCTGTT CAGCAACTGG
ACACCGAAAC AGGACAAGGA AGCCGCGTGA
 
Protein sequence
MLSVALCFLV GGAIPSPPSF DVTIAPWLIA RSRDVLAAPE MLGLRDVLIR SHELSDVEIP 
LPPGAAVLWR ILALITARIT GLDQPPNKNP KRKWQARRSQ ILSKGRLDPE AVDAYFADYS
ERFDLFHPER PWLQDPRLRE ECPKTSGVNK LAWGRTAGEN QVWLGGHHHD LDPHPLDSAE
AVWHLLATLG YGPSGMCTAR VVRGRSERNV TAGPLRGTVS YHPLGRTLFE SLILNIPYPG
TGAADLAFWE QPELNDPLGL PEESAGLAGI LRLDHFRHAV LLHPSPDGSH VVDAWVTWAW
RERNISPELD PYLIYQTSKE GRVYPRPAEA ERAIWRDLDA LLHYGEDGNY RPTILDNCTP
LAQVPQEVLD SLRLRAFGFD QDGQARDKQW FTATTPAVLR WLADRETDDN ENARIVRRIT
LARKAAEALG RRLEKACKEA WKESNSPSST SSGTNAKTET GVGPWVQHGM SRYWAKAEPV
FWNIVYDRPA QGYTPGMAGP GNAFNLVALA AYDEVTGPYC ERPRVAKVVE RHRSTLFSNW
TPKQDKEAA