Gene Tfu_1552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_1552 
Symbol 
ID3579505 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand
Start bp1788670 
End bp1790526 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content63% 
IMG OID637685247 
ProductPAS:protein phosphatase 2C-like:GAF 
Protein accessionYP_289611 
Protein GI72161954 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGGGAGGG GAGGCCTATG GGAACACCTG GAGTCTGTGA CCGGTTTCGA CTCGGGTAAG 
CAGCCTTGCG CGTGGAAAGA AGGCAGCGCC GTGCCTAGCG ACCATCAGCC GCATCCAGTC
TCGTTTTCCG CATCGGAGCA GGACTTGCCG CGTAAAGTCC TGTCCGGGCT CAAAATCGGG
GTGTACGTGA CTAATGACCG CGAACAGATC ATTGCGGTCA ACCCTCGTGG GGAGAAACTT
CTCGGTCGCT CTGAGTCCGC CATGATAGGG CGTAACGCCC ATGACCTGCT GCATCGGGCT
GAAGGCGGGG CTCTGCTGCC TCGTTCCCAA TGCCCGCTGA TGAAAGCCTT CCTGCAAGGA
CAGAGCGTCT ACGGTGGCAA CAAGTGGTTC CTGCGTGGTG ACGGCGCCCT GCTGCCCGTG
ATCTGGTTGA CCGCCCCGTA CCGCATTAAC AGGGACACTA CGGGGGCGCT GGTGTTGTTC
CATCCCCGTG ACCCGCGGGG TGACCCCTCT TCTGAGGAGG TTCCTGTCGA CCAGGTGACC
ACGCTGACCG ACCTTGCTGA CAGTCTTTCC CTGATCGCCG AGGTCACTTC GGTGCTGACG
TCTACTTTGC AGGTCAGGGA AGCGCTGTGG CTGCTGGCGC GGCAGGTCAC GCCTCGTCTT
GCGGACTGGG TCGTTATTGA CCTGCTCAAC GAGATAGGGG AACTGGAGCG GGCGCTTGTG
GTCCACCACG AAAACGGGCG GCATATCCGT CGGGAAGAGA TGCAGGGGCC GCTGCCACCC
GTTTCAGAAA CCTCTTTGAT GCCGCTGTCG CGGGTGCTGC GCGGGGCGTC GACGACTCGG
GTCAGTCTCC GCGACTACCA GCGTCCCCCC GACACGGGTT TGGCCATGGC TCAGCGGACG
CTGTTTGAAC GCACCCGGAT TCACGCGGCC ATCACCGCGC CGCTGCGGGG GCCGCGCGGC
GCCATTCTGG GGGCGCTCAC TTTGGGGCGT GCCGATCAGC TCCACGATTT CACCAGCACC
GAGTTGGCGT TGGTCGACGA CTTGGCCCGT CAGGCCGGGC TGGCTATCGA CAATGCGCGA
CTGTATGAGC GTCAGCAGCG GGTCACCGAA ACCATGCAGC GGTATCTGCT GTCGCCGCTT
CCCGAAACGG TTTTGGTGAA GATGGCGGTG CGCTACCATC CTGCGCCTGA TGCCTCCCAC
GTGGGTGGGG ACTGGTATGA CGCTTTTCGT CTTCAAGACG GCACCCCTGC TCTGGTTATC
GGGGATGTGG CGGGCCACGA CTTGCAGGCC GCGTCTCACA TGGCGCAGAT CCGCAACATG
CTGCGGGCGT TGGCGTGGGA CCGTGACGAG CCGCCCAGCA GTATCGTCAG CCGGTTGGAC
CACGCGTTGG GGCACATCAG TGAAGTCTCC ATGGCCACCA TGGTTTTTGC GCGGCTTGAA
GAAGACGGTT CTGAAGGGCG GCGGGTTTTG CGGTGGACGA ACGCTGGCCA CCTGCCGCCG
TTGCTGGTGT TGCGGGACGG GCAGGCCCGT TTCCTCGACG AGCACCACGA CCTGTTGTTG
GGTGCTGAGA CGGATATTCC GCGCACCGAC TCCGCTGTTG AACTGCCGGT GGCGAGTACG
GTCGTGTTCT ATACCGACGG GCTTATCGAA TCCACCCGCC ACGGTCTGGA CGAGGGTATG
GCGCAGCTGC GTCAGCATGC TGCCGAGCTC GTCCACCACG AGCTCGACGA CTTTTGTGAC
CTGCTCATTG AGCGCGTCCG CCCTGAGGAC AACGATGACG ATGTCGCTGT GATCGTGATC
CGGGTTCCTG AATCCCCCGT GATTCCGCCA AGCCGGCCTT CCTCCCACAC GCCTTAA
 
Protein sequence
MGRGGLWEHL ESVTGFDSGK QPCAWKEGSA VPSDHQPHPV SFSASEQDLP RKVLSGLKIG 
VYVTNDREQI IAVNPRGEKL LGRSESAMIG RNAHDLLHRA EGGALLPRSQ CPLMKAFLQG
QSVYGGNKWF LRGDGALLPV IWLTAPYRIN RDTTGALVLF HPRDPRGDPS SEEVPVDQVT
TLTDLADSLS LIAEVTSVLT STLQVREALW LLARQVTPRL ADWVVIDLLN EIGELERALV
VHHENGRHIR REEMQGPLPP VSETSLMPLS RVLRGASTTR VSLRDYQRPP DTGLAMAQRT
LFERTRIHAA ITAPLRGPRG AILGALTLGR ADQLHDFTST ELALVDDLAR QAGLAIDNAR
LYERQQRVTE TMQRYLLSPL PETVLVKMAV RYHPAPDASH VGGDWYDAFR LQDGTPALVI
GDVAGHDLQA ASHMAQIRNM LRALAWDRDE PPSSIVSRLD HALGHISEVS MATMVFARLE
EDGSEGRRVL RWTNAGHLPP LLVLRDGQAR FLDEHHDLLL GAETDIPRTD SAVELPVAST
VVFYTDGLIE STRHGLDEGM AQLRQHAAEL VHHELDDFCD LLIERVRPED NDDDVAVIVI
RVPESPVIPP SRPSSHTP