| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1552 |
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| Symbol | |
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| ID | 3579505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 1788670 |
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| End bp | 1790526 |
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| Gene Length | 1857 bp |
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| Protein Length | 618 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637685247 |
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| Product | PAS:protein phosphatase 2C-like:GAF |
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| Protein accession | YP_289611 |
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| Protein GI | 72161954 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGGAGGG GAGGCCTATG GGAACACCTG GAGTCTGTGA CCGGTTTCGA CTCGGGTAAG
CAGCCTTGCG CGTGGAAAGA AGGCAGCGCC GTGCCTAGCG ACCATCAGCC GCATCCAGTC
TCGTTTTCCG CATCGGAGCA GGACTTGCCG CGTAAAGTCC TGTCCGGGCT CAAAATCGGG
GTGTACGTGA CTAATGACCG CGAACAGATC ATTGCGGTCA ACCCTCGTGG GGAGAAACTT
CTCGGTCGCT CTGAGTCCGC CATGATAGGG CGTAACGCCC ATGACCTGCT GCATCGGGCT
GAAGGCGGGG CTCTGCTGCC TCGTTCCCAA TGCCCGCTGA TGAAAGCCTT CCTGCAAGGA
CAGAGCGTCT ACGGTGGCAA CAAGTGGTTC CTGCGTGGTG ACGGCGCCCT GCTGCCCGTG
ATCTGGTTGA CCGCCCCGTA CCGCATTAAC AGGGACACTA CGGGGGCGCT GGTGTTGTTC
CATCCCCGTG ACCCGCGGGG TGACCCCTCT TCTGAGGAGG TTCCTGTCGA CCAGGTGACC
ACGCTGACCG ACCTTGCTGA CAGTCTTTCC CTGATCGCCG AGGTCACTTC GGTGCTGACG
TCTACTTTGC AGGTCAGGGA AGCGCTGTGG CTGCTGGCGC GGCAGGTCAC GCCTCGTCTT
GCGGACTGGG TCGTTATTGA CCTGCTCAAC GAGATAGGGG AACTGGAGCG GGCGCTTGTG
GTCCACCACG AAAACGGGCG GCATATCCGT CGGGAAGAGA TGCAGGGGCC GCTGCCACCC
GTTTCAGAAA CCTCTTTGAT GCCGCTGTCG CGGGTGCTGC GCGGGGCGTC GACGACTCGG
GTCAGTCTCC GCGACTACCA GCGTCCCCCC GACACGGGTT TGGCCATGGC TCAGCGGACG
CTGTTTGAAC GCACCCGGAT TCACGCGGCC ATCACCGCGC CGCTGCGGGG GCCGCGCGGC
GCCATTCTGG GGGCGCTCAC TTTGGGGCGT GCCGATCAGC TCCACGATTT CACCAGCACC
GAGTTGGCGT TGGTCGACGA CTTGGCCCGT CAGGCCGGGC TGGCTATCGA CAATGCGCGA
CTGTATGAGC GTCAGCAGCG GGTCACCGAA ACCATGCAGC GGTATCTGCT GTCGCCGCTT
CCCGAAACGG TTTTGGTGAA GATGGCGGTG CGCTACCATC CTGCGCCTGA TGCCTCCCAC
GTGGGTGGGG ACTGGTATGA CGCTTTTCGT CTTCAAGACG GCACCCCTGC TCTGGTTATC
GGGGATGTGG CGGGCCACGA CTTGCAGGCC GCGTCTCACA TGGCGCAGAT CCGCAACATG
CTGCGGGCGT TGGCGTGGGA CCGTGACGAG CCGCCCAGCA GTATCGTCAG CCGGTTGGAC
CACGCGTTGG GGCACATCAG TGAAGTCTCC ATGGCCACCA TGGTTTTTGC GCGGCTTGAA
GAAGACGGTT CTGAAGGGCG GCGGGTTTTG CGGTGGACGA ACGCTGGCCA CCTGCCGCCG
TTGCTGGTGT TGCGGGACGG GCAGGCCCGT TTCCTCGACG AGCACCACGA CCTGTTGTTG
GGTGCTGAGA CGGATATTCC GCGCACCGAC TCCGCTGTTG AACTGCCGGT GGCGAGTACG
GTCGTGTTCT ATACCGACGG GCTTATCGAA TCCACCCGCC ACGGTCTGGA CGAGGGTATG
GCGCAGCTGC GTCAGCATGC TGCCGAGCTC GTCCACCACG AGCTCGACGA CTTTTGTGAC
CTGCTCATTG AGCGCGTCCG CCCTGAGGAC AACGATGACG ATGTCGCTGT GATCGTGATC
CGGGTTCCTG AATCCCCCGT GATTCCGCCA AGCCGGCCTT CCTCCCACAC GCCTTAA
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| Protein sequence | MGRGGLWEHL ESVTGFDSGK QPCAWKEGSA VPSDHQPHPV SFSASEQDLP RKVLSGLKIG
VYVTNDREQI IAVNPRGEKL LGRSESAMIG RNAHDLLHRA EGGALLPRSQ CPLMKAFLQG
QSVYGGNKWF LRGDGALLPV IWLTAPYRIN RDTTGALVLF HPRDPRGDPS SEEVPVDQVT
TLTDLADSLS LIAEVTSVLT STLQVREALW LLARQVTPRL ADWVVIDLLN EIGELERALV
VHHENGRHIR REEMQGPLPP VSETSLMPLS RVLRGASTTR VSLRDYQRPP DTGLAMAQRT
LFERTRIHAA ITAPLRGPRG AILGALTLGR ADQLHDFTST ELALVDDLAR QAGLAIDNAR
LYERQQRVTE TMQRYLLSPL PETVLVKMAV RYHPAPDASH VGGDWYDAFR LQDGTPALVI
GDVAGHDLQA ASHMAQIRNM LRALAWDRDE PPSSIVSRLD HALGHISEVS MATMVFARLE
EDGSEGRRVL RWTNAGHLPP LLVLRDGQAR FLDEHHDLLL GAETDIPRTD SAVELPVAST
VVFYTDGLIE STRHGLDEGM AQLRQHAAEL VHHELDDFCD LLIERVRPED NDDDVAVIVI
RVPESPVIPP SRPSSHTP
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