| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1542 |
|---|
| Symbol | |
|---|
| ID | 3579495 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 1777367 |
|---|
| End bp | 1778704 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637685237 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_289601 |
|---|
| Protein GI | 72161944 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2311] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.170969 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCGAACA GTTCCAGCCG ATCCACTTCT TTTCCCGGTC CCATGTCTCC ACCTGAGACC
GACTCTTCTG TCGAAACACG CACCCAGCAT CGCGCTCCCA CTCCCCAGGA GGGGTCCTCC
CCGCCAGTCA AACCACCGGT CCCGCGTCTT CTCGGGGTCG ACGTTGCCCG AGGTGTGGCG
ATCCTCGGCA TGTTCGTCGT GCACGTGGGG GTGGGGTGGA CGCTCGCTGA TGGCACCAAC
CCCCTGCAGC CCCTTGCCGC GGGACGCTCC GCCGCACTGT TCGCACTCCT GGCGGGAGTG
TCCATTGCGC TGCTGTCCGG GGGGCACGAC CGCAAAGTCA ACAAAGACCT CGGCGTGGCG
CTGTGGCGTG TGGTGGTGCG TGCCGTGATC CTGCTGATTC TCGGCACGGC GCTGACCATG
CTGGGCACCC CGGTGTCGGT GATCCTCGCC TACTACGCCG TGTTCTTCGT GTTCGCCTGC
ATGCTGCTGA CCGAGCGGTG GACCGTCATC GCCGGTGCGG CCGCCACGCT GGGTTTCATC
GGCCCCATCG TGTCGTTTTG GATCCGCTCC CGGATCGACC GAGGGGGCAC CATGGCGAGG
ATCGTGGAGA CCGTCAACGC CTACGACCCG CTCGTCGCGT TGGCGGACGA CGGAGTGGTG
AACTTCCTGC TCACCGGCTC CTATCCCGCG ATCACTTGGC TGCCGTTCGT GTTCGCGGGA
TTGGCGATCG GCCGTCTTGA CCTGCGGCAG CCGCGTGTGC GCTGGCGGCT GGTCGCGGTA
GGCGCGGGAA TGGCGGCCGC GGCCTACACC CTGTCGTGGC TGGCGATCCG CGGGCTGGGG
CTTGACGAAC GGTTGGCTGC CACCCTCGAC CCGGACACGG GTATTCCCTT CGGCATCGAC
GGGTTCAACC AACTGTATGC CGAAGGCATG GGGGGCACCG TGCCCGCCAC CGACTGGGCG
TGGCTGCTGG TGACTGCTCC GCACAGTGGA ACCTTCATGG ACGTCTACGG TGCGGGTGGT
GTGGCGATCG CACTGCTGGG CCTGTGCCTG ATCGTCACTG ATGCTCTGGG CCGGGCACGC
TGGCTGGTCT ACCCGCTGAT CGCTGTGGGG TCGCTGTCGC TGACCACGTA TGTGGGGCAC
ATCCTGCTGA TCTGGCTGGA TGAGAACGAC ATGCTGGACG GCACCCCGCT GTCGTTCCTC
TCGGAATGGT TGAGCCTGTC GGTTCTGCTG GGCTCGCTGA TTTTCGCCAC CCTGTGGCAT
CGGCTGGTGA AACGGCGCGG CCCGTTGGAG GGTCCGCTGC ACGTGGTGTC CACCTGGGTA
GCGAAACGCA TCCCCTGA
|
|---|
| Protein sequence | MSNSSSRSTS FPGPMSPPET DSSVETRTQH RAPTPQEGSS PPVKPPVPRL LGVDVARGVA
ILGMFVVHVG VGWTLADGTN PLQPLAAGRS AALFALLAGV SIALLSGGHD RKVNKDLGVA
LWRVVVRAVI LLILGTALTM LGTPVSVILA YYAVFFVFAC MLLTERWTVI AGAAATLGFI
GPIVSFWIRS RIDRGGTMAR IVETVNAYDP LVALADDGVV NFLLTGSYPA ITWLPFVFAG
LAIGRLDLRQ PRVRWRLVAV GAGMAAAAYT LSWLAIRGLG LDERLAATLD PDTGIPFGID
GFNQLYAEGM GGTVPATDWA WLLVTAPHSG TFMDVYGAGG VAIALLGLCL IVTDALGRAR
WLVYPLIAVG SLSLTTYVGH ILLIWLDEND MLDGTPLSFL SEWLSLSVLL GSLIFATLWH
RLVKRRGPLE GPLHVVSTWV AKRIP
|
|---|
| |