| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1491 |
|---|
| Symbol | |
|---|
| ID | 3581684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 1723427 |
|---|
| End bp | 1724470 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637685186 |
|---|
| Product | putative ABC transporter, periplasmic iron-siderophore binding protein |
|---|
| Protein accession | YP_289550 |
|---|
| Protein GI | 72161893 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00253008 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACTCGA CGCTCCGCAC CCTGCCCGCA CGCCTCATGA GCGCGGGCAT CGCCGCCGCT
GTGATTCTCA GCCTCGCCGC CTGCGGGGGA TCGAGCACGG ACGGTGGTGA GGACACCGCC
CCCTCGGCTG ACGGCGCCTT CCCGGTCCGT ATCGAAAGCG CCCTCGGCGT TGCGGAGATC
ACCGAAAAAC CCGAGCGGAT CGTCACCCTG GGCCAAGGAT CAGCCGAAAC CGCGATCGCG
CTCGGCACCG TCCCCGTGGG TATCGAAAGC TACGAGTGGG GCAGCGACGA GACCGGCTAC
CTGCCGTGGA TTTACGAAGC CGTCACCGAA GCCGGCGAAG AACTCCCCGT CCAGTTCACC
GGCGGCGAAG ACATCGACTT CGAAACCATC ATCGAACTGG AACCCGACGT CATCCTGGCC
CCCTGGTCCG GAATCACCCA GGAGCAGTAC GACATCCTCA ACGACATCGC CCCCACCGTC
GCCTACCCTG AACTGCCCTG GACCATTGAA TGGGACCAGC AGATCGAGAT CATCGGCCAA
GCCCTCGGTC AGAGCGAGGA AGCCCAGGAA CTGATCGACG ACATCGAGCG GCAGTTCGAC
GAGGCCGCCG CCTCCCGCCC CGAATACGCC GAGCTCACCT TCTCCTACAT CTACACTGAC
GGTCCCGGCA CCCTCGGTGT CTTCATGCCC CACGAACAGC GCGTGGCCAT GGTGAGCAAA
CTCGGCCTGC AGGTCGACCC CGTCGTGGAG ACCCTGCCGG AAACCGAAGG CACCGCCTCC
GCAGTCATCG GCCTGGAAAA CGCCGACAAG CTGAAGGACA GCGACCTTAT CTTCACCTTC
TACACCGACG CGGAGACCCG CAAAGAAATC GAATCCCAGG AGCTGTACGC GTCCATCCCG
GCAATCGAAC GCGGATCGGT AGTGGTCAGC GAAGACACGT CCTTCGTCAC CGCCTCCTCC
ATCATCAACC CGCTCACCGT GCCGTGGGTC CTGGACCGCT ACCTTCCCCT GATCGACGAG
GCCGTCGCTC AACTCGACCG CTAA
|
|---|
| Protein sequence | MHSTLRTLPA RLMSAGIAAA VILSLAACGG SSTDGGEDTA PSADGAFPVR IESALGVAEI
TEKPERIVTL GQGSAETAIA LGTVPVGIES YEWGSDETGY LPWIYEAVTE AGEELPVQFT
GGEDIDFETI IELEPDVILA PWSGITQEQY DILNDIAPTV AYPELPWTIE WDQQIEIIGQ
ALGQSEEAQE LIDDIERQFD EAAASRPEYA ELTFSYIYTD GPGTLGVFMP HEQRVAMVSK
LGLQVDPVVE TLPETEGTAS AVIGLENADK LKDSDLIFTF YTDAETRKEI ESQELYASIP
AIERGSVVVS EDTSFVTASS IINPLTVPWV LDRYLPLIDE AVAQLDR
|
|---|
| |