| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1413 |
|---|
| Symbol | |
|---|
| ID | 3580964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 1637201 |
|---|
| End bp | 1638424 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637685110 |
|---|
| Product | isochorismate synthase |
|---|
| Protein accession | YP_289474 |
|---|
| Protein GI | 72161817 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1169] Isochorismate synthase |
|---|
| TIGRFAM ID | [TIGR00543] isochorismate synthases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.36594 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCAC GCACCGTTGC CTTGCGTGAC CAGCGCGCTC TGCTCGACCT GCTGCCTCCC
GCCGCACCGC TGGCGTGGGT TCGGCGGGGT GAGGGACTGG TGGCGTGGGG AGTCGCGGCG
CGCTTGGAAC TGCCCGCCGA GCCGGAGCGG TCCGGCATTC AACGGTTCAC GGCGGCAGAT
GAATGGCTTG AATCGCTGTT CTCGACGATC GTGGTGGACG ACGACGTGGG GGTGCCGGGT
AGCGGACCTG TGGTGTTCGG CTCGTTCACG TTCGACGGCC GCGACGCCGG ATCCACGCTC
ATCCTGCCGC GAGTCGTCGT GGGACGGCGG GACGGGCAGA CGTGGCTCAC CGTGGTGGGT
GACGAAGCCG ACCCGCTGCC GGCCGTGCCG CCACCCCGCC CGGTGGGGGC ACTGCGGTGG
CGGCCGGGCA CGCTCAGCGA AGCAGAGTGG TGCGCAGTGG TGAGCCAGGC CGTGGACCGC
ATCCACACCA CCGGGCTAGC GAAAGTGGTC CTGGCGCGCG ACCTTGTCGC GGAAGCGGAC
CATCCCATTG ATGTCCGCAC CCCGCTGCAG CGGCTGGCCG CCGACTATCC GGACTGCTAC
GTCTACTCGG TGGTGGGACT GACCGGGGCT ACCCCGGAAC TGTTGCTGCG CCGTACCGGC
ACCCGCCTGG AGTCGCTGGT GCTGGCGGGG ACCGCGCCGC GGGGGGCCAC CGCGGACGAC
GACGCTGTGC TCGCGAAAAC GCTGCTCACT TCCGCGAAAG ATGTCGAAGA GCACGCCTAT
GCGGTGGAGT CGCTGCGCGA GTCGCTGGCC CCGTTCTGCA CGGAACTGGA CGTGCCCCGC
CACCCCGAAC TGCTGCGTCT TGCCAACGTG CAGCATTTGG CCACCCCGGT GCGGGCCGTA
CTCCCCGCAA AGACGGCGAC CCTGCCAGTG CTGGCGGCCC TGCATCCCAC TGCCGCGGTG
GGCGGCACCC CGACCCGGGT AGCGATGGAC GTCATCGGCG AATTGGAAGG AATGCGCCGC
GACCGCTACG CCGGGCCGGT GGGGTGGATT GATGCGCGCG GCGACGGGGA GTGGGGGATC
GCGCTGCGCT GCGCTCAGAT CACCGGGCCG CGGGCCCGCC TCTTCGCTGG GGCAGGGATC
GTCGCCGACT CTGACCCGCA GGCGGAGCTC GCGGAAACCG TGGCGAAGTT CCGCGCGGTG
CGCGCCGCCC TCACCGGACG GTAA
|
|---|
| Protein sequence | MTARTVALRD QRALLDLLPP AAPLAWVRRG EGLVAWGVAA RLELPAEPER SGIQRFTAAD
EWLESLFSTI VVDDDVGVPG SGPVVFGSFT FDGRDAGSTL ILPRVVVGRR DGQTWLTVVG
DEADPLPAVP PPRPVGALRW RPGTLSEAEW CAVVSQAVDR IHTTGLAKVV LARDLVAEAD
HPIDVRTPLQ RLAADYPDCY VYSVVGLTGA TPELLLRRTG TRLESLVLAG TAPRGATADD
DAVLAKTLLT SAKDVEEHAY AVESLRESLA PFCTELDVPR HPELLRLANV QHLATPVRAV
LPAKTATLPV LAALHPTAAV GGTPTRVAMD VIGELEGMRR DRYAGPVGWI DARGDGEWGI
ALRCAQITGP RARLFAGAGI VADSDPQAEL AETVAKFRAV RAALTGR
|
|---|
| |