| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1411 |
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| Symbol | |
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| ID | 3580962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | + |
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| Start bp | 1634379 |
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| End bp | 1636040 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637685108 |
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| Product | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase |
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| Protein accession | YP_289472 |
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| Protein GI | 72161815 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
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| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00764162 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCCGT CTACCGCACT GGCGCGTGTC CTTGTCGACG AGCTGGCTCG GCTGGGGCTG
ACCGAGGCAG TGATCGCGCC GGGCTCCCGT TCCACGCCGC TGGCCTTGGC CCTGGTGGCC
GACACCCGGA TCCGCACCCA CGTCCGCATC GACGAACGTT CCGCGTCCTT CCTGGCTGTC
GGTCTGGCCC GCGCCTCGCG CCGCCCGGTT GCGCTCGTGT GCACCTCCGG TACGGCCGCA
GCGAACTTCC ACCCCGCCGT GCTGGAAGCT GACCAGAGCG GGGTCAGTCT CATCGTGCTC
ACCGCGGACC GGCCTCCCGA ACTGCGGGGG ACCGGCGCCA ACCAGACAGT GAACCAGATC
GGCCTGTACG GTTCCGCGGT CCGGTTCTTC GCGGAAGTGG GCGTGCCGGA ACGCGAAGCA
GGCATGGTCG CCTACTGGCG GTCCCTGGTC TGCCGGGCCT GGGCTGCCGC CCAGGCGAAC
AAGCCGGGTC CCGTCCACCT CAACCTGGCG TTCCGGGAGC CGCTGGTTCC GGAACCGGGA
GGGCAGCCCT GGCCGGAACC GGTGACGGGG CGGCCCGACG GGAAACCGTG GATCACCGTC
GACCTCCAGC GGAACGAACC CGAACCGGTG GAACTGCCGT GGGTGGAGCG GGGCGTCATC
GTCTGCGGTG ACGGTGACTA CGACCCGATC CCCCTGCTCG CCCTGTCCGC CCAGACCGGC
TGGCCGCTGC TGGCCGAACC CACCTCGAAC GCCCGCAGGG CGGAAGCCCT CTCCAGCTAC
CGGCAACTGC TCGCTGTCCC CGAGTTCGTC GCCGCCCACG AACCGGAACT GGTGGTGAGC
GTGGGACGGC CGGGCCTGTC CCGGCAACTG CTCGCCTACC TGCGCCGCGC CCCGCGGCAC
GTAGTCGTGG GGGACCCGGT GGCATTCGCC GACCCGGTGC GGACCGCCAC CGACGTGGTC
GGCGCGGTCA CCGCCCCGCC GTCCGCCACC CCCGACACGG CGTGGGCCGC ATCCTGGGCC
GCAGCGGAAG CAGCCGCCCG GGCCGCCGCC GACCGGCTGC TCGACAGCGA CGAGACGCTC
TCCGAGCTGC GGCTGGCCCG CGACCTGGCC GCCCACCTGC CCGCAGGGTC TCTCCTGTTC
GCTGGGGCCA GCATGCCGAT CCGGGACTTG GACGCGGTGA TGCGGCCGCG GTGCGGGCTG
CGGCTGATCG GCAATCGAGG CGTCAGCGGG ATCGACGGCA CCGTCTCCAC CGCGGTGGGT
GCAGCCCTCG CCCACCAGGC CGACGGCGGA GGGGAAGCGT TTGCCCTGCT CGGCGACCTG
GCGCTGCTCC ACGACCAGAA CGGGCTCCTG CTGGGCCCGG ACGAGCCCCG CCCCAACCTG
ACGATCGTGG TGGTCAACAA CGACGGAGGC GGGATCTTCT CCGAACTGGA GCAGGCCGGG
CACCCCGACT TCGAACGGGT TTTCGGCACC CCCCACGGCG TGGCCGTGGA ACAGGTCGCC
GCCACCGCGG GACTGCCCTA CACGCGCGTG GAGTGGGCCA CCGACCTGCC CAAAGCCCTC
ATCGGGGACG GGCTGCGCCT CGTGGAGGTT CGCACAGACC GCGCTGCTTC AGCCCGCCTG
CGCCGCGCTC TGCAGGAAGC AGTCGCCGCC GCGGTGCGGT AA
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| Protein sequence | MNPSTALARV LVDELARLGL TEAVIAPGSR STPLALALVA DTRIRTHVRI DERSASFLAV
GLARASRRPV ALVCTSGTAA ANFHPAVLEA DQSGVSLIVL TADRPPELRG TGANQTVNQI
GLYGSAVRFF AEVGVPEREA GMVAYWRSLV CRAWAAAQAN KPGPVHLNLA FREPLVPEPG
GQPWPEPVTG RPDGKPWITV DLQRNEPEPV ELPWVERGVI VCGDGDYDPI PLLALSAQTG
WPLLAEPTSN ARRAEALSSY RQLLAVPEFV AAHEPELVVS VGRPGLSRQL LAYLRRAPRH
VVVGDPVAFA DPVRTATDVV GAVTAPPSAT PDTAWAASWA AAEAAARAAA DRLLDSDETL
SELRLARDLA AHLPAGSLLF AGASMPIRDL DAVMRPRCGL RLIGNRGVSG IDGTVSTAVG
AALAHQADGG GEAFALLGDL ALLHDQNGLL LGPDEPRPNL TIVVVNNDGG GIFSELEQAG
HPDFERVFGT PHGVAVEQVA ATAGLPYTRV EWATDLPKAL IGDGLRLVEV RTDRAASARL
RRALQEAVAA AVR
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