| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1398 |
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| Symbol | |
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| ID | 3581025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | + |
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| Start bp | 1620108 |
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| End bp | 1622981 |
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| Gene Length | 2874 bp |
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| Protein Length | 957 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637685095 |
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| Product | glycine dehydrogenase |
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| Protein accession | YP_289459 |
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| Protein GI | 72161802 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
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| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.67826 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGGACC GTTCTGTTTC CCGTCCCCCT GCGCTCACGT TCCCGGACCG GCACATCGGC
CCTGACCCGG CGGAACGTGC CGCCATGCTG GAGACGGTGG GATACGCGTC CACCGCAGAC
CTCATGACCG CGGCCCTGCC CGCCGACATT CTCACCGCCC CTGATGCTCC CGCGCCTTTG
CGCCTGCCGG AACCGGTGGG GGAGGCCGAG GTGCTCGCGG AACTGCGGGC TCTTGCCGCC
CGCAACCGCC TGCTGGTCTC CATGATCGGC CAGGGCTACT ACGGTACGGT CACCCCTCCG
GTGATCCGCC GCAACATCCT GGAAAACCCT GCCTGGTACA CCGCCTACAC CCCCTACCAG
CCGGAGATCT CCCAGGGGCG GCTTGAGGCG CTGCTGAACT TCCAGACCAT GGTCGCCGAC
CTGACCGGGC TGCCCATTGC CGGAGCCTCC CTGCTGGACG AGGCCACCGC GGCGGCCGAG
GCGATGACGT TGGCTCGCCG GGTGGACAAA GGGAAGCGGT CGGTGTTCGT GGTCGACGCC
GACGTGTTCG GCCACACGCT GGCCGTGCTG CGGACCCGGG CCGAACCGTT GGGGATCGAC
CTGGTCGTCG CTGACCTGAG TGCAGGACTG CCGGATGTGG ACGCGTTCGG GGTCCTCGTG
CAGTATCCGG CGGCCAGCGG CCAGGTACGG GACCTGCGCC CGGTGGTGGA CGCCGCCCAC
GAACGGGGCG CGCTCGTCGT CGTGGCCGCT GACCTGCTGG CGTTGACCGT GCTCCGCAGC
CCTGGAGAGT TCGGTGCGGA CGTGGCTGTG GGCTCCACCC AGCGGTTCGG GGTGCCCATG
GGGTTCGGCG GCCCGCACGC CGCCTACATG GCAGTCCGGG ACGGGCTGCA GCGGCAACTT
CCGGGCCGCC TGGTCGGGGT TTCCGTGGAC GCGGCAGGGA AACCCGCCTA CCGGTTGGCC
CTGCAAACCC GGGAACAGCA CATCCGCCGC GAGAAAGCCA CCAGCAACAT TTGCACCGCC
CAGGTGCTGC TCGCCGTGAT GGCGGGCATG TACGCCGTCT ACCACGGCCC GCACGGGCTT
CGCGCGATCG CGGAGCGGGT CCACCGCCGC ACCGCGGAAC TCGCCGCCGG GCTGCGGAAG
CTCGGGGTGG AGGTGCTCAC CGACGCGTTC TTCGACACGC TGCGGGTGCG GGTGCCGTCC
CGGGCCGCGG CCGTGGTGCG CACCGCGCGT GACCTCGGCA TCAACCTGTT CTTCGCCGAC
GAGGACACGG TCGGTGTCTC CTGCGATGAG ACCACCACAT CCGAGCATGT GGCGGCTGTG
CTGCGCGCGT TCGGGGCTAC CACCCCGCCG CAGACCGGGG ACGTCCCGTC CGCGCTGCCG
GAAGGGTTGC GCCGCGACGT CGACTACCTC ACCCACCCCG TGTTCCACAC CTACCGCAGC
GAAACCGCGA TGCTGCGCTA CCTGCGGCGG CTCGCCGACC GGGACCTGGC GTTGGACCGC
ACCATGATCC CGTTGGGCTC GTGCACGATG AAGCTCAACG CCACCGCGGA AATGGAGGCG
ATCACCTGGC CCGAGTTCGC GGAACTGCAC CCGTTCGCCC CCCTCGACCA GGCGGAAGGC
CTGGTGCAGA TCGTGCGGGA CTTGGAGACG TGGCTCGCGG AGATCACCGG ATACGACGCG
GTCTCCCTGC AACCCAACGC GGGCTCCCAA GGCGAGTTCG CGGGCCTGCT CGCTATCCGC
GGCTACCACC GCAGCCGCGG TGAAGAGCAG CGCGACATCT GTCTCATCCC GAGTTCCGCG
CACGGCACTA ACGCGGCCAG CGCCGTCATG GCGGGCATGC GGGTGTCTGT GGTGGCGTGC
GACAGTGGCG GCAACATCGA CCTGGCGGAC CTGCGCGCCA AGATCGACGC TGCCGGGGAC
CGGCTGGCCG CGCTCATGGT CACCTACCCT TCCACCCACG GGGTGTACGA GGAGACCATT
GCCGAAGTGT GCCGGCTCGT GCACGAGGCG GGCGGCCAGG TCTACGTGGA CGGCGCCAAC
CTCAACGCAC TCGTCGGCTG GGCCAAGCCC GGGAAGTTCG GGGCAGACGT CAGCCACCTG
AACCTGCACA AGACGTTCTG CATCCCGCAC GGCGGCGGTG GCCCCGGCGT GGGACCGGTC
GCGGTCCGCG CCCACCTCGC CCCGTTCCTG CCGAACCATC CGGCGCACAC CGAGGCGGGG
CCGCACACGA GCGCGGGCCC GGTGGCTGCG GCCCCGTTCG GTTCCGCGAG TATCCTGCCG
ATTTCGTGGG CCTACATCCG GCTGATGGGG GAGGAAGGGC TGCGTGCCGC CACCGAACAG
GCGGTGCTTG CCGCCAACTA TGTGGCCCGG CGGCTGGCCC CCTACTATCC GGTGCTGTAC
ATGGGACGCA ACGGACTGGT GGCCCACGAA TGCATCATCG ACCTGCGCGG CCTGCAGAAA
CGCACCGGAA TCAGCAACGA GGACGTTGCT AAACGGCTCA TCGACTACGG CTTCCACGCG
CCCACCATGT CCTTCCCGGT GCCGGGCACG CTGATGATCG AACCGACGGA GAGCGAGGAC
CTCGCCGAAC TGGACCGGTT CATCGACGCG ATGATCGCGA TCCGCGGCGA GATCGACCGG
GTGGCGGAAG GCAGCTACGA CCGGGCAGAC AACCCGTTGA AGAACGCTCC GCACACGGCA
GAAGAAGTCA CCGCGGACGA GTGGAAGCAC GCCTACTCGC GGTCGGAAGC CGCCTACCCG
GTGCCGAGCC TGCGCGCCAG CAAATACTGG GCGCCGGTGG GCCGGATCGA CCAGGCCTAC
GGGGACCGCA ACCTCGTGTG CGCCTGCCCG CCCCCGGAGG CTTTCGCGCA GTAG
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| Protein sequence | MSDRSVSRPP ALTFPDRHIG PDPAERAAML ETVGYASTAD LMTAALPADI LTAPDAPAPL
RLPEPVGEAE VLAELRALAA RNRLLVSMIG QGYYGTVTPP VIRRNILENP AWYTAYTPYQ
PEISQGRLEA LLNFQTMVAD LTGLPIAGAS LLDEATAAAE AMTLARRVDK GKRSVFVVDA
DVFGHTLAVL RTRAEPLGID LVVADLSAGL PDVDAFGVLV QYPAASGQVR DLRPVVDAAH
ERGALVVVAA DLLALTVLRS PGEFGADVAV GSTQRFGVPM GFGGPHAAYM AVRDGLQRQL
PGRLVGVSVD AAGKPAYRLA LQTREQHIRR EKATSNICTA QVLLAVMAGM YAVYHGPHGL
RAIAERVHRR TAELAAGLRK LGVEVLTDAF FDTLRVRVPS RAAAVVRTAR DLGINLFFAD
EDTVGVSCDE TTTSEHVAAV LRAFGATTPP QTGDVPSALP EGLRRDVDYL THPVFHTYRS
ETAMLRYLRR LADRDLALDR TMIPLGSCTM KLNATAEMEA ITWPEFAELH PFAPLDQAEG
LVQIVRDLET WLAEITGYDA VSLQPNAGSQ GEFAGLLAIR GYHRSRGEEQ RDICLIPSSA
HGTNAASAVM AGMRVSVVAC DSGGNIDLAD LRAKIDAAGD RLAALMVTYP STHGVYEETI
AEVCRLVHEA GGQVYVDGAN LNALVGWAKP GKFGADVSHL NLHKTFCIPH GGGGPGVGPV
AVRAHLAPFL PNHPAHTEAG PHTSAGPVAA APFGSASILP ISWAYIRLMG EEGLRAATEQ
AVLAANYVAR RLAPYYPVLY MGRNGLVAHE CIIDLRGLQK RTGISNEDVA KRLIDYGFHA
PTMSFPVPGT LMIEPTESED LAELDRFIDA MIAIRGEIDR VAEGSYDRAD NPLKNAPHTA
EEVTADEWKH AYSRSEAAYP VPSLRASKYW APVGRIDQAY GDRNLVCACP PPEAFAQ
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