| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1360 |
|---|
| Symbol | |
|---|
| ID | 3580374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 1577211 |
|---|
| End bp | 1578431 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637685057 |
|---|
| Product | helix-hairpin-helix DNA-binding motif-containing protein |
|---|
| Protein accession | YP_289421 |
|---|
| Protein GI | 72161764 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAAG GGTACCAAGA GGCGTCATTC GGAAAGCGTG TCCAGGCTAT TCGAGAACGG
AACGGCATGA CCCGTGCCAC CCTTGGCGGA CTCGTGGGTC GCTCTGCTGA GTGGGTTAAG
AGCATCGAAA AGGGGCGTCT TCAGATGCCG CGCCTCGACA TGCTCACCCA GTTGGCTGCG
GCACTTGGGT GCGACCTTGC GGAGCTGGTC GGCGGAAAGC ACCCGATCAT CGTCGCCCCC
TATGTGAAGG AGGCGCATCC CGCCCTTCTG GAGATACGGG AGGCGCTCAC CTCCTATCCG
ATCGGGCGGG ATGAGGAGCC TGCTACTGCG GCAGAGCTTG CCGAGCGGGT GCGGCACGCC
TGGATGGTGT GGCATGGCAG CCGCGCCAAC CACCGGACCC GTATCGCTGC GCTCCTGCCG
CCGCTGCTGG CAGACCTGCG ATACGCCGCT CGCGTGCATG AGGGCAAGGA GCGGCGTTCG
GTGCTGGCGT CGCTGGCCGA GGCGTACCAC CTTGCGCAGT TGTTTCTCAG CTTCCAGCCT
GCCCCGGACC TAGTGCTGCT GACGGGTGAC CGTGGCATGG AGGCCGCGTT GGAGGCCGAC
AACCCGAGAG CGATCGCGTC GGCGGCGTGG TACATGAACC ACGTCTTCCG TGACGCTGGG
GAGAGGCACG AGGCTCGGGT TGAGCTGGCC ATGCAGGCCG CACGCCTGCT GGACCCCGAG
AAGGACTCCG ACGAACTGGC GCGGTGGGGA CTGCTGCACC TGGCGGTCGC CCTGTCCTAC
GCGAAGGTTG GACGCGCTGG CGATGCGTGG CGCTACTGGG ACATCGCGTA TGAAGCGGCC
CAGAAGCTGG GGCGGTCGTA TGCGCACCCG TACCTGATCT TCGGTATGGG CATTGTCGAG
GGCTATGCGG TGACGATGCA TGACGACCTC ATGCAGGGCG GGAAGGCGGT GGAGGCCGCC
GCGAAGGTCG ACCTGGGGCT GATCCCGTCG GCGACCCGGC GGGCGTTCCA CATCATCGAG
ACGGCGCGTG GGCACTGGCA GCGCGGCGAA CAGGCTGCCG TGGTTCACCT GCTGAACAAG
GCTCATCGAG AGAGCCCGGA GACGATTAGG TTCAACATCT TCTCGCGGAG GGCCGTGTCG
GACATGGTGT CGAACCCTCC GTCGATGTTG CGCGAGGACG TGGACAGTCT GGCCCAGAAG
CTGGGGGTCG TAGCCCGGTA G
|
|---|
| Protein sequence | MSEGYQEASF GKRVQAIRER NGMTRATLGG LVGRSAEWVK SIEKGRLQMP RLDMLTQLAA
ALGCDLAELV GGKHPIIVAP YVKEAHPALL EIREALTSYP IGRDEEPATA AELAERVRHA
WMVWHGSRAN HRTRIAALLP PLLADLRYAA RVHEGKERRS VLASLAEAYH LAQLFLSFQP
APDLVLLTGD RGMEAALEAD NPRAIASAAW YMNHVFRDAG ERHEARVELA MQAARLLDPE
KDSDELARWG LLHLAVALSY AKVGRAGDAW RYWDIAYEAA QKLGRSYAHP YLIFGMGIVE
GYAVTMHDDL MQGGKAVEAA AKVDLGLIPS ATRRAFHIIE TARGHWQRGE QAAVVHLLNK
AHRESPETIR FNIFSRRAVS DMVSNPPSML REDVDSLAQK LGVVAR
|
|---|
| |