Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_1271 |
Symbol | |
ID | 3581070 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | - |
Start bp | 1476173 |
End bp | 1477930 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637684968 |
Product | PAS:protein phosphatase 2C-like:GAF |
Protein accession | YP_289332 |
Protein GI | 72161675 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0325345 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGACACC AGGCAGAGCA CGGCAAGCGC AGTGGCCAGG CCGCCGCTGC AGACCCGCTG CTTGTCGAAA AGGTCCTGAC CGGCCTGGAC ATCGGGATCT ACGTCACCGA CGCACAAGAG CGCATCGTCT CAGTGAACCC GCGTGCTGAA GAGATCCTGC GCTGGTCCGC AGCGCTTCTG GTCGGCAGCA ACGCGCATGA CGCACTGCAT CGGAGCGCAA ACGGCACCCT GCTGTCGCCC CAGGAGTGCA AACTGACCCA GGACTACCAG CACGAATTCA CCATCCGTGC GGGCAGCGCA TGGTTCATGT GCGGCGACGG CGGACTGCTG CCGGTGGTGT GGCTGGTCGC CCCCTACCGG TTGGAGAACG GAGATCCGGG GACGGCGGTG CTGTTCCACG AACGGGTCTT CGACCCTGAA ATGTTCGGCA CGTACGACCC CGACCATGTG GCAGCGCTGA CCGCGAACCT GTCGCTGATC TCCGCAACCA CCACGGTGCT GACCTCCCAT GTGGAGATCG CGGAAGCCCT GCGCCAAGTC GTGCAGTTGG TGCTGCCGCG CCTCGCCGAC TGGGCCATCG TGGATTTGAT CGACGAACAC GGCCACGTCC GCCGGGCCGC GGCGATACAC TACCACGACA ACCGCCACGT GCGGGTCGAA GAACTGGAAG GCTCGCTCCC ACCGGTTCCC CCGGAGTCGC AGATGCCGCT CTCCCGGGTC CTCAAAGGCG CCCCGGTGTC CCGGATCAGC CCCGAAGACT ACAGCGTGCC CCCGGACGCG GAGATGGCCG TGGTGCAGCG GCGACTGTTC GCCACCACGG GGATGCATTC CGCGATCGCC GCTCCGCTGC GCGGCCGGGG CGGCAGCATC CTCGGCGTGC TGACCCTCGG CCGTTCCAAG GAGCGTCCCG ACTTCACCTC CACCGAGATC ACCCTGGTCG ACGACATCGC CCACCAGGCC GGGCTCGCCC TCGACTACGA GCAGCAGCGC CGAGTCGCAG AAACCATGCA GCGCTACCTG CTGCCGCAGC TTCCCCGCAT CCCCGGACTC GAAATGGAGG CACGCTACTA CCCTGCACCC CAGTCCTCCC GGGTCGGCGG CGACTGGTAT GACGCGTTCA CCTTGGCGGA CGGCACGCTC ACCATGGTGC TCGGCGACGT GACAGGACAC GACCTGCGCT CGGCCGCCCA GATGGCCGAG ATCCGCAGTA TGCTGCGCGC TTTCGCCTGG GACCACACGT CCACCCCCGG GGAGATCGTC TCCCGGCTCG ACCAGGCGCT GGTCACTTTG GACGCCCCCA CCATGGCCAC CCTCATCTTC GCCCGGCTGG AACGGACAGC GGACTCTTCA TGGCAGTTGG CCTGGACCAA TGCTGGGCAT CCGCCCCCGC TGCTGCTCGA CCGCGACGGC CACAGCCGCT TTCTCGACGC GGAGAATGAC CCTCTGCTCG GCGTCGTCCC CTTTGCGCGT CGCCAGAACT TCACCACCAC CCTGACACCG TCGACCACCG TGGTGTTCTA CAGCGACGGC CTGGTCGAAT CGGCTGCGCG CCCTATCGAC ACCGGCCTGG AGTCGCTGCG CGACCACGCT GCCCGCCTGG CGCACTCCTC CCTTGCGGAC TTGTGCGACG GGCTCATCTC CCGGGTCCGT GCCGCGGGCC ACGACGACGA CGTGGCGCTC CTCGCGCTCC GTGTCACCGA CCCTCAGATG GTCCCGTGCA CCCCGAAGAC GCAGATCAAC AGCGCATCCC CCACCTGA
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Protein sequence | MRHQAEHGKR SGQAAAADPL LVEKVLTGLD IGIYVTDAQE RIVSVNPRAE EILRWSAALL VGSNAHDALH RSANGTLLSP QECKLTQDYQ HEFTIRAGSA WFMCGDGGLL PVVWLVAPYR LENGDPGTAV LFHERVFDPE MFGTYDPDHV AALTANLSLI SATTTVLTSH VEIAEALRQV VQLVLPRLAD WAIVDLIDEH GHVRRAAAIH YHDNRHVRVE ELEGSLPPVP PESQMPLSRV LKGAPVSRIS PEDYSVPPDA EMAVVQRRLF ATTGMHSAIA APLRGRGGSI LGVLTLGRSK ERPDFTSTEI TLVDDIAHQA GLALDYEQQR RVAETMQRYL LPQLPRIPGL EMEARYYPAP QSSRVGGDWY DAFTLADGTL TMVLGDVTGH DLRSAAQMAE IRSMLRAFAW DHTSTPGEIV SRLDQALVTL DAPTMATLIF ARLERTADSS WQLAWTNAGH PPPLLLDRDG HSRFLDAEND PLLGVVPFAR RQNFTTTLTP STTVVFYSDG LVESAARPID TGLESLRDHA ARLAHSSLAD LCDGLISRVR AAGHDDDVAL LALRVTDPQM VPCTPKTQIN SASPT
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