Gene Tfu_1271 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_1271 
Symbol 
ID3581070 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand
Start bp1476173 
End bp1477930 
Gene Length1758 bp 
Protein Length585 aa 
Translation table11 
GC content67% 
IMG OID637684968 
ProductPAS:protein phosphatase 2C-like:GAF 
Protein accessionYP_289332 
Protein GI72161675 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0325345 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGACACC AGGCAGAGCA CGGCAAGCGC AGTGGCCAGG CCGCCGCTGC AGACCCGCTG 
CTTGTCGAAA AGGTCCTGAC CGGCCTGGAC ATCGGGATCT ACGTCACCGA CGCACAAGAG
CGCATCGTCT CAGTGAACCC GCGTGCTGAA GAGATCCTGC GCTGGTCCGC AGCGCTTCTG
GTCGGCAGCA ACGCGCATGA CGCACTGCAT CGGAGCGCAA ACGGCACCCT GCTGTCGCCC
CAGGAGTGCA AACTGACCCA GGACTACCAG CACGAATTCA CCATCCGTGC GGGCAGCGCA
TGGTTCATGT GCGGCGACGG CGGACTGCTG CCGGTGGTGT GGCTGGTCGC CCCCTACCGG
TTGGAGAACG GAGATCCGGG GACGGCGGTG CTGTTCCACG AACGGGTCTT CGACCCTGAA
ATGTTCGGCA CGTACGACCC CGACCATGTG GCAGCGCTGA CCGCGAACCT GTCGCTGATC
TCCGCAACCA CCACGGTGCT GACCTCCCAT GTGGAGATCG CGGAAGCCCT GCGCCAAGTC
GTGCAGTTGG TGCTGCCGCG CCTCGCCGAC TGGGCCATCG TGGATTTGAT CGACGAACAC
GGCCACGTCC GCCGGGCCGC GGCGATACAC TACCACGACA ACCGCCACGT GCGGGTCGAA
GAACTGGAAG GCTCGCTCCC ACCGGTTCCC CCGGAGTCGC AGATGCCGCT CTCCCGGGTC
CTCAAAGGCG CCCCGGTGTC CCGGATCAGC CCCGAAGACT ACAGCGTGCC CCCGGACGCG
GAGATGGCCG TGGTGCAGCG GCGACTGTTC GCCACCACGG GGATGCATTC CGCGATCGCC
GCTCCGCTGC GCGGCCGGGG CGGCAGCATC CTCGGCGTGC TGACCCTCGG CCGTTCCAAG
GAGCGTCCCG ACTTCACCTC CACCGAGATC ACCCTGGTCG ACGACATCGC CCACCAGGCC
GGGCTCGCCC TCGACTACGA GCAGCAGCGC CGAGTCGCAG AAACCATGCA GCGCTACCTG
CTGCCGCAGC TTCCCCGCAT CCCCGGACTC GAAATGGAGG CACGCTACTA CCCTGCACCC
CAGTCCTCCC GGGTCGGCGG CGACTGGTAT GACGCGTTCA CCTTGGCGGA CGGCACGCTC
ACCATGGTGC TCGGCGACGT GACAGGACAC GACCTGCGCT CGGCCGCCCA GATGGCCGAG
ATCCGCAGTA TGCTGCGCGC TTTCGCCTGG GACCACACGT CCACCCCCGG GGAGATCGTC
TCCCGGCTCG ACCAGGCGCT GGTCACTTTG GACGCCCCCA CCATGGCCAC CCTCATCTTC
GCCCGGCTGG AACGGACAGC GGACTCTTCA TGGCAGTTGG CCTGGACCAA TGCTGGGCAT
CCGCCCCCGC TGCTGCTCGA CCGCGACGGC CACAGCCGCT TTCTCGACGC GGAGAATGAC
CCTCTGCTCG GCGTCGTCCC CTTTGCGCGT CGCCAGAACT TCACCACCAC CCTGACACCG
TCGACCACCG TGGTGTTCTA CAGCGACGGC CTGGTCGAAT CGGCTGCGCG CCCTATCGAC
ACCGGCCTGG AGTCGCTGCG CGACCACGCT GCCCGCCTGG CGCACTCCTC CCTTGCGGAC
TTGTGCGACG GGCTCATCTC CCGGGTCCGT GCCGCGGGCC ACGACGACGA CGTGGCGCTC
CTCGCGCTCC GTGTCACCGA CCCTCAGATG GTCCCGTGCA CCCCGAAGAC GCAGATCAAC
AGCGCATCCC CCACCTGA
 
Protein sequence
MRHQAEHGKR SGQAAAADPL LVEKVLTGLD IGIYVTDAQE RIVSVNPRAE EILRWSAALL 
VGSNAHDALH RSANGTLLSP QECKLTQDYQ HEFTIRAGSA WFMCGDGGLL PVVWLVAPYR
LENGDPGTAV LFHERVFDPE MFGTYDPDHV AALTANLSLI SATTTVLTSH VEIAEALRQV
VQLVLPRLAD WAIVDLIDEH GHVRRAAAIH YHDNRHVRVE ELEGSLPPVP PESQMPLSRV
LKGAPVSRIS PEDYSVPPDA EMAVVQRRLF ATTGMHSAIA APLRGRGGSI LGVLTLGRSK
ERPDFTSTEI TLVDDIAHQA GLALDYEQQR RVAETMQRYL LPQLPRIPGL EMEARYYPAP
QSSRVGGDWY DAFTLADGTL TMVLGDVTGH DLRSAAQMAE IRSMLRAFAW DHTSTPGEIV
SRLDQALVTL DAPTMATLIF ARLERTADSS WQLAWTNAGH PPPLLLDRDG HSRFLDAEND
PLLGVVPFAR RQNFTTTLTP STTVVFYSDG LVESAARPID TGLESLRDHA ARLAHSSLAD
LCDGLISRVR AAGHDDDVAL LALRVTDPQM VPCTPKTQIN SASPT