Gene Tfu_1158 details

Gene Information

• Locus tag: Tfu_1158
• ID: 3580842
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermobifida fusca YX
• Kingdom: Bacteria
• Replicon accession: NC_007333
• Strand: +
• Start bp: 1349432
• End bp: 1351276
• Gene Length: 1845 bp
• Protein Length: 614 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 637684853
• Product: ABC-type multidrug transport system ATPase and permease components
• Protein accession: YP_289219
• Protein GI: 72161562
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0064562
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGCCC CGACCCGTAC CCGGACTTCC CCCGCCCAGG CCCCCGCGGA GGCTTCCACG 
CCTGCGCCCA CCGCGCCCGC CCTGCACCGG TCTACCGAGT CAGCGTGGGC CACTCTGCGC 
CGCGGGGTCG CCCTGTCCCC CGAATTCACT CGCGGCCTGC CGGTGACCGT GGCCCTCGCC 
GTGGTGGCGA CCCTCGGCAA AGTGATCGTG CCGCTCGCCG TCCAGCAGAT CATCGACAAC 
GGGCTGCTCG CCGAAGGCGG ACCCGACATC GGCTTCGTGG TGGCCACGGT CGCGCTCTGC 
ACAGCCCTGG TCGTCGTCAC CGCGCTGTGC TCCTACCTGA TGAACGCGCG CCTCTACCAG 
TCCACCGAAT CCGGGCTGGC CACGCTGCGC CGCACAGCGT TCCGCCACGT GCACGACCTG 
TCGGTGCTCA CCCAGAACAG TGAACGCAAA GGCGCCCTGG TCTCCCGCGT CACCAGCGAC 
GTCGACCAGA TCAGCACCTT CATGCAGTGG GGCGGCATCC TGCTCATCGT CAGCACCGGC 
CAGTTGGCGA TCGCCACCGT GCTCATGGCC GTGTACTCCT GGCAGTTGAC CCTGCTGGTG 
TGGGTGTGCT TCCTGCCCCT GCTTTTCGGG GTGCGCTGGC TGCAGCGGCT GCTCTCCAAG 
GCCTACCTGA AAGTCCGGGA ACGCACGGGG GAGATGCTCG GCGTCATCGG GGAGACCGTG 
GTGGGCGCCG CGGTGATCCG CGCCTACGGC ACTGAGGAGC GCACGGCGCG GCGCATCGAC 
CGGACCGTAC TGGCCACCCG CAACGCCCAA GTCAAAGCCC AGCGCCTCTC CATGGCGGTC 
TCCCCGCTGG CCGAGCTCGT CTCCGCGTTC ACCTACGCGG TCGTCATCGC GGTCGGTATC 
TGGCTGGGGG TCATCGGCTC GCTCACCGCG GGACAGCTCG TGGCCTTCCT GTTCCTCATC 
AACCTGTTCG TCGCCCCCAT GACGATGGCC ACCGAGATCT TCAACGAAGC CCAGAACGCG 
ATCGCGGGCT GGCGACGGGT CCTGGGGGTC CTCGACACCG AACCCGACAT CGCGGATCCG 
GGAGCCTCCG GCACCCCCCT GCCGCACGGC CCGATCTCCA TCCGCTTCGA CCACGTCAAC 
TACGCCTACC CCGGCGGCCC CCGCGTGCTC GACGACATCA CCGTGGAGAT CGCCCCGGGC 
AGCCGTGTCG CCGTGGTCGG GGAGACCGGT TCCGGCAAGA CCACCTTCGT CAAACTCCTT 
ACCCGGCTCA TGGACCCGGA CGAAGGCAAG ATCCTGCTCA ACGGGGTGAA CCTGCGCGAA 
GTGGCGTTCT CCTCGCTGCG CTCCCGCGTG GTGCTGGTCC CCCAGGAAGG GTTCCTGTTC 
GACAGCACTC TGGCCGACAA CATCCGCTTC GCTCGGCCTG AGGCCACCGA CGAGCAGATC 
ACCGAGGCGA TCACCCAGTT GGGGCTCAGC GAATGGCTGG CGGGCCTACC GCACGGCCTG 
GCCACGCCCG TGGGGCAGCG CGGCGAGTCC CTGTCCGCGG GGGAGCGGCA GCTCGTTGCC 
TTGATCCGGG CCTACATTGC CGACCCCGAT CTGCTCATCC TGGACGAGGC CACCTCGGCG 
GTCGACCCGG CCACGGAGGT CCGCATCCAG CACGCCCTGG ACCTCCTCAC CCGGGGCCGC 
ACTTCGGTGG CGATCGCGCA CCGGCTGTCC ACCGCGGAGG CCGCCGACGA AGTGCTGGTC 
TTCGACCGCG GCCGGATCGT CCAGCGCGGC ACCCACGCCG AACTGGTCGC CCGTCCCGGC 
GTGTACGCGG ACTTGCACGC CTCCTGGGTG CGCAGCTCCG CGTGA 

 

Protein sequence

MSAPTRTRTS PAQAPAEAST PAPTAPALHR STESAWATLR RGVALSPEFT RGLPVTVALA 
VVATLGKVIV PLAVQQIIDN GLLAEGGPDI GFVVATVALC TALVVVTALC SYLMNARLYQ 
STESGLATLR RTAFRHVHDL SVLTQNSERK GALVSRVTSD VDQISTFMQW GGILLIVSTG 
QLAIATVLMA VYSWQLTLLV WVCFLPLLFG VRWLQRLLSK AYLKVRERTG EMLGVIGETV 
VGAAVIRAYG TEERTARRID RTVLATRNAQ VKAQRLSMAV SPLAELVSAF TYAVVIAVGI 
WLGVIGSLTA GQLVAFLFLI NLFVAPMTMA TEIFNEAQNA IAGWRRVLGV LDTEPDIADP 
GASGTPLPHG PISIRFDHVN YAYPGGPRVL DDITVEIAPG SRVAVVGETG SGKTTFVKLL 
TRLMDPDEGK ILLNGVNLRE VAFSSLRSRV VLVPQEGFLF DSTLADNIRF ARPEATDEQI 
TEAITQLGLS EWLAGLPHGL ATPVGQRGES LSAGERQLVA LIRAYIADPD LLILDEATSA 
VDPATEVRIQ HALDLLTRGR TSVAIAHRLS TAEAADEVLV FDRGRIVQRG THAELVARPG 
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