| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1123 |
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| Symbol | |
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| ID | 3579325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | + |
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| Start bp | 1309858 |
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| End bp | 1310787 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637684818 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_289184 |
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| Protein GI | 72161527 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.095131 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTGATC ACCGGAGCAT GCCGGTACCT GACGGGTTGG AAGGCGATCG GCTCGATACG
GCAATCGCCC GCCTCTTCGG CCTGTCGCGG ACCCGTGCAG CCGAGCTGAT CGCTGAAGGC
AATGTGCTGG TCGATGGTGC GCCAGCAGCG AAGTCCGACC GGGTGAACGC CGGGGCGTGG
CTGGACATCA CCCTGCCCCC GCCCCCGAAC CCCCCTGCGC CGCGTCCCGA GCCGGTGCCG
GGGATGCGCA TCGTGTACGA GGACGCCGAC ATTGTCGTGG TGGACAAGCC CGCGGGCGTG
GTCGCCCACC CCACGATCGG CTGGTCGGGG CCGACCGTGG TGGACGGGCT GCTGGCCGCA
GGGGTCGCGG TCGCGACCAG TGGTGCCGCC GAACGGCAGG GCATCGTGCA CCGCTTGGAC
GCCAACACCA CGGGGCTGAT GGTGGTCGCG AAAAGCGAGA TCGCCTACAG CTCGCTGAAA
CGCGCGTTCA AGGAGCGCAC AGTGGAGAAG GTCTACCACG CGCTCGTGCA GGGGCACCCT
GATCCGCTGC GCGGCACGAT CGACGCGCCG ATCGACCGGC ACCCGTCAGG GGACGGCCGG
TTCGCGGTGG TGGCGGGCGG CCGCCCGTCG GTGACCCACT ACACCACGTT GGAGGCGTTC
CGCGCGGCCA GCCTGCTGGA AATCGACTTG GAGACGGGCC GCACCCACCA GATCCGCGTC
CACATGTCGG CGATCCGCCA CCCGTGCGTG GGGGACACCC TGTACGGGGC GGATCCCACG
TTGGCGGAGC GGCTGGGGGT GCACCGGCAG TGGCTGCACG CGATCCGGTT GGCGTTCACC
CACCCCACGC AGTACCGCCG GGTGGAGTTC ACCAGCTCGT ATCCGGAGGA TTTGGCGAAG
TCGCTGGAGA TTCTCCGCGC AGAGTCGTGA
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| Protein sequence | MSDHRSMPVP DGLEGDRLDT AIARLFGLSR TRAAELIAEG NVLVDGAPAA KSDRVNAGAW
LDITLPPPPN PPAPRPEPVP GMRIVYEDAD IVVVDKPAGV VAHPTIGWSG PTVVDGLLAA
GVAVATSGAA ERQGIVHRLD ANTTGLMVVA KSEIAYSSLK RAFKERTVEK VYHALVQGHP
DPLRGTIDAP IDRHPSGDGR FAVVAGGRPS VTHYTTLEAF RAASLLEIDL ETGRTHQIRV
HMSAIRHPCV GDTLYGADPT LAERLGVHRQ WLHAIRLAFT HPTQYRRVEF TSSYPEDLAK
SLEILRAES
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