| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1111 |
|---|
| Symbol | |
|---|
| ID | 3579293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 1296152 |
|---|
| End bp | 1297570 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637684806 |
|---|
| Product | UDP-N-acetylmuramate--L-alanine ligase |
|---|
| Protein accession | YP_289172 |
|---|
| Protein GI | 72161515 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
|---|
| TIGRFAM ID | [TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
[TIGR01082] UDP-N-acetylmuramate--alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGG TCGAACCGAC CGAACCGGTC GAAGTCGACA AGCTGGGCCG CGTCCACTTC
ATCGGCATGG GGGGCGCGGG CATGTCCGGA ATCGCGCGCG TGCTGCTGCA GCGCGGCGTG
GAAGTGTCCG GCAGTGACGC ACGGGACAGC GCCCTGCTCC GGGAACTGGA GGAGCTCGGC
GCGACCGTCC ACGTCGGCCA CGCCGCCGAG CACGTGGGGG ACGCCGACAC GGTCGTCGTC
TCCTCCGCGA TCCGCGACAC CAACCCGGAG CTCGTGGAAG CACGCGCCCG CAACCTGCGC
ATCCTGCCGC GCGCCGCGGC CCTCGGCGCA CTGCTGCTGG GCCGCTGCGG GGTCGCCGTC
GCGGGAACCC ACGGCAAGAC CACCACCACG TCCATGATCA CCGTGGTGTT GCAGCACCTG
GGGGCCATGC CCGGGTATGT CATCGGCGGG CAGCTGGTCA CCACCGGGCT CGGCGCTGAT
GCGGGCGCGG ACGACATCAT CGTGGTGGAG GCCGACGAAA GCGACGGCTC CTTCCTCATG
CTTTCGCCCC GCGTCGCGGT GATCACCAAC GTCGAAGCCG ACCACTTGGA CAACTACGGC
GACCTGGAAG AGATCCACGA CAAGTTCGCC GCATTCATCG GCCGCGTGTC CGAAACCGTG
GTGGTAGGGG TGGACGACCC GGGGGCGCGC CGGGTCGCCG AGGTCGCCCG CCAGCGGGGG
CTGAAAGTCC TCACCTACGG CGAAGCCGAC ACGGCCGACT ACCGGGTCCG CGACATCACC
GTGGACGGGT TCACCACGAT GTTCACCATC GACCCGCCCA CCGGGGACCC GGTGCACTGC
ACCCTTCCCC TGCCCGGCCG GCACAACACG CTCAACGCCG CTGCCGCTGT CGCTGTCGCC
GACACCATCG GCTACGACCC TGAAGTCGCG GTGGAAGGAC TCGCCGAATT CGCGGGGGCG
GCCCGCCGCT TCGAATTCAA GGGCGAAGCG AACGGGGTGA GCGTCTACGA CAGCTACGCC
CACCACCCCA CCGAGATCGC CGCCGATTTG GACGCCGCAC GCGCCGCACT CGACTCGCAG
GCCGCCAAGG GCGGGAAGGC CGGCCGGATC GTGGTGCTGT TCCAGCCCCA CTTGTACAGC
CGGACCCGCA TCTTCGCCGA AGAGTTCGCT GCCGCGCTCA CCAAGGCGGA CGAGGTCGTC
GTCCTCGGGA TCTACGCTGC CCGCGAAGAC CCCGAGCCGG GGGTCACCGC CGAGCTGATC
ACCGAGCGCA TCGGCCACGA CCGGGTCTAC TACCGTCCCG ACCGCGACGC CGCGGTCGAA
TGCGTGGTGT CGGTGGCGCA GCCAGGCGAC ATCGTGCTGA CCATGGGCGC CGGGGACGTG
ACGGAGCTCG GCCCGCGCAT CGTCGAAGCC CTCGGATAA
|
|---|
| Protein sequence | MSLVEPTEPV EVDKLGRVHF IGMGGAGMSG IARVLLQRGV EVSGSDARDS ALLRELEELG
ATVHVGHAAE HVGDADTVVV SSAIRDTNPE LVEARARNLR ILPRAAALGA LLLGRCGVAV
AGTHGKTTTT SMITVVLQHL GAMPGYVIGG QLVTTGLGAD AGADDIIVVE ADESDGSFLM
LSPRVAVITN VEADHLDNYG DLEEIHDKFA AFIGRVSETV VVGVDDPGAR RVAEVARQRG
LKVLTYGEAD TADYRVRDIT VDGFTTMFTI DPPTGDPVHC TLPLPGRHNT LNAAAAVAVA
DTIGYDPEVA VEGLAEFAGA ARRFEFKGEA NGVSVYDSYA HHPTEIAADL DAARAALDSQ
AAKGGKAGRI VVLFQPHLYS RTRIFAEEFA AALTKADEVV VLGIYAARED PEPGVTAELI
TERIGHDRVY YRPDRDAAVE CVVSVAQPGD IVLTMGAGDV TELGPRIVEA LG
|
|---|
| |