| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1106 |
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| Symbol | |
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| ID | 3579288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | + |
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| Start bp | 1289563 |
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| End bp | 1290975 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637684801 |
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| Product | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase |
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| Protein accession | YP_289167 |
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| Protein GI | 72161510 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.120509 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATCGCGC TGACGCTCGA TCGGATCGCC AAGATCACCC GATCACGACT ACGCGGATCG
GCGCAGCCCA CGGACACTGT CGACGGCCCG GTGGTCATCG ACTCGCGGGA GGCCGCTCCT
GGTTCGCTGT TCGTTGCCTT GCGAGGCAGC CGTGTCGACG GCCACGACTT CGCTGAGGCC
GCGGTCAGAG CCGGAGCGAC AGCCGTTCTG TGCTCCCGCC CCGTGGACGC GCCCCATCTG
CTCGTCGACG GCGGCGACGA CGCGGTAGTA GCGGCACTGG CGAAGCTGGC GCGCGCGGTC
GTAGCGGAAC TCCCCGACGC GGACATCATC GGCGTCACCG GGTCGTCGGG GAAGACCACG
ACAAAAGACC TGCTCGCTCA GACGCTGCAG CGGATCGGCC CCACCGTCGC GCCCCCGGGA
TCGTTCAACA ACGAAATCGG TCATCCGCTC ACCGTGTTGC GGGCGGACCA GACCACCCGT
TTCATCGCGT TGGAGGTCGC CGCGCGCGGC GTGGGACACA TCGCGCACCT GTGCCAGATC
GCGCCGCCAC GCATCGGAGT CGTGCTCAAT GTCGGCAGCG CCCACATGGG CGAGTTCGGC
AGCCGGGACA CCATCGCCCA GGCCAAAGGC GAACTCGTGG AAGCGCTTCC CGCGGCCGCG
CAAGGAGGGG TCGCCGTCCT CAACGCCGAC GACGACGCCG TCATCGGCAT GGCCTCGCGC
ACCGCAGCGC GAGTCGTGAG CTACGGCCTG GCCCCCGACG CCGACGTGCG GGCTGAAGGC
ATCGCCCTAG ACGAACGCGG GCGTCCTCGC TTCACCCTCG CCATCGGCGA GGACACCGCC
CCCGTGAGTC TGCGGCTCGT CGGCACCCAC CAAGTGCACA ACGCCCTGGC CGTCGCCGCA
GTCCTCCGCG AACTCGGCGA ACCGGTCACC GCTATCGCCG CGGCACTGAG CGAAGCCGGA
CCGGTGAGCC GCTGGCGCAT GGAGGTCACC GAGCGGCCTG ACGGCGTAAC CATCGTCAAC
GACGCCTACA ACGCCAACCC CGAATCCATG AGTGCGGCAC TGCGCACCCT GGCGACGCTG
GCCTCCGGCC GCCGCGCTTT CGCGGTCCTC GGCCACATGG CCGAACTCGG CTCCGCGCAC
CGGACCGAAC ACGAACGGAT CGGACGGCTG GTGACCGAAA GCGGAGTGGA CGTCCTCATC
ACCGTCGGAG AGCAGGCCGC GAGCATCGCG GACGGCGCCG CCTCCGTTGC CGACTGGAAA
GGGGAGACCG TCACGGTCGC CGACGTGACC GAGGCGGTCG CGGTGCTCAA AGAGCGTCTC
AGACCCAAGG ACATCGTCAT GTTGAAGGGA TCACGAGTGG CTGGGCTGGA GCAGGTAGCC
GAGCAGCTGA TCGATGTGGA GGCGGCTGAA TGA
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| Protein sequence | MIALTLDRIA KITRSRLRGS AQPTDTVDGP VVIDSREAAP GSLFVALRGS RVDGHDFAEA
AVRAGATAVL CSRPVDAPHL LVDGGDDAVV AALAKLARAV VAELPDADII GVTGSSGKTT
TKDLLAQTLQ RIGPTVAPPG SFNNEIGHPL TVLRADQTTR FIALEVAARG VGHIAHLCQI
APPRIGVVLN VGSAHMGEFG SRDTIAQAKG ELVEALPAAA QGGVAVLNAD DDAVIGMASR
TAARVVSYGL APDADVRAEG IALDERGRPR FTLAIGEDTA PVSLRLVGTH QVHNALAVAA
VLRELGEPVT AIAAALSEAG PVSRWRMEVT ERPDGVTIVN DAYNANPESM SAALRTLATL
ASGRRAFAVL GHMAELGSAH RTEHERIGRL VTESGVDVLI TVGEQAASIA DGAASVADWK
GETVTVADVT EAVAVLKERL RPKDIVMLKG SRVAGLEQVA EQLIDVEAAE
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