| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1039 |
|---|
| Symbol | |
|---|
| ID | 3579591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 1217385 |
|---|
| End bp | 1218431 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637684734 |
|---|
| Product | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase |
|---|
| Protein accession | YP_289100 |
|---|
| Protein GI | 72161443 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2876] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
|---|
| TIGRFAM ID | [TIGR01361] phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCATCG TTATGGCGCC CGACGCCCCT TCCGACACCA TCGACTCCAT CGTTGACCTC
GTCGCCTCGG TGGGTGGTGA GGCCTACGTG ACCCGGGGGG TGAGCCGGAC CATCATCGGC
CTGGTAGGCG ACGTGGAACG GTTCGAGACG CTTAATCTGC GTGCCCTCCC CGGCGTCGCC
GACATCCTGC GCATCTCCAC TCCCTACAAG CTGGTCAGCC GGGAAAACAC GACTGAGCGG
TCGGTCGTGC AGGTTGCTGG GGTACCGATC GGCGGCGACC ATATGACACT CATCGCCGGT
CCCTGCGCGG TGGAAACCCC GGAGCAGACT TTGGAAGCGG CGCTGATGGC GAAGCGTGCG
GGTGCCGCGC TGCTGCGCGG CGGCGCCTAC AAGCCGCGGA CCTCCCCCTA CGCGTTCCAG
GGCCTGGGCG AGACCGGTCT GAAGATCCTG TCGGATGTGC GTGCGGAGAC CGGCCTGCCG
ATTGTGACCG AAGTGGTGGA CGCCTCCGAC GTGGAGCTGG TCGCCTCCTA CGCCGACATG
CTGCAGATCG GCACCCGCAA CATGCAGAAC TTCGCGCTGC TGCAAGCCGT GGGCGACGCG
GGCAAGCCGG TGCTGCTCAA ACGCGGGATG AGCAGCACGA TCGAGGAGTG GCTGATGGCC
GCCGAGTACA TTGCGCAGCG CGGCAACTTG AACATCGTGC TGTGCGAGCG CGGCATCCGC
ACGTTCGAGA AAGCGACCCG TAACACGCTG GACGTGAGCG CGGTCGCCGT GGCGCAGCGG
CTGTCGCACC TGCCCGTGGT GGTGGACCCG TCGCATTCGG GCGGCAAGCG GGAACTGGTG
CTGCCGCTGT CGCGTGCGGC GATCGCGGTG GGCGCGGACG GCCTCATCGT CGACGTGCAC
CCTGCTCCGG AGACGGCACT GTGCGACGGG CCGCAGGCGC TCACGCACGC AGACTTGGCC
GAGCTGGCGC ACGTGGTGAC GGCGCTGCCG CCGCTCGTGG GCCGCACGCT CACGCCCAGC
GTGGCGCAGG TGGGCGCCGG CGTGTAA
|
|---|
| Protein sequence | MVIVMAPDAP SDTIDSIVDL VASVGGEAYV TRGVSRTIIG LVGDVERFET LNLRALPGVA
DILRISTPYK LVSRENTTER SVVQVAGVPI GGDHMTLIAG PCAVETPEQT LEAALMAKRA
GAALLRGGAY KPRTSPYAFQ GLGETGLKIL SDVRAETGLP IVTEVVDASD VELVASYADM
LQIGTRNMQN FALLQAVGDA GKPVLLKRGM SSTIEEWLMA AEYIAQRGNL NIVLCERGIR
TFEKATRNTL DVSAVAVAQR LSHLPVVVDP SHSGGKRELV LPLSRAAIAV GADGLIVDVH
PAPETALCDG PQALTHADLA ELAHVVTALP PLVGRTLTPS VAQVGAGV
|
|---|
| |