| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1031 |
|---|
| Symbol | |
|---|
| ID | 3579661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 1208065 |
|---|
| End bp | 1209861 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637684726 |
|---|
| Product | long-chain fatty-acid-CoA ligase |
|---|
| Protein accession | YP_289092 |
|---|
| Protein GI | 72161435 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGTGAGT ACACCACCCC CGCGGTAAAG GAACTTGACC CGGATACACG ACTCACTGAC
ACCGTCTTCA CCCGTGCGGC TCAGGAACCC AACGCCGTGA TGTTCCGGCG GCTCGTGGAC
GGTGCGTGGC GAGACGTGAC CTGCGCTGAA TTCCACCGCG ACGTCATGGG CGTGGCCAAG
GCGCTCATCG CCGCCGGGAT CAACCACGGC GACCGGGTAG CGCTCATGTC GCGGACCCGC
TACGAGTGGA CCGTCATCGA CTACGCCATC TGGACCATCG GCGGAGTGAC CGTCCCCATC
TTCGACACCT CCTCCGAAGA GCAGGTCGAG TGGATCCTCC GCGACTCGGG AAGCACGCTC
GCCTTCGTGG AGAACGACGA GCACGCGGAA CGAGTCCGGG CTGTCTCCGC ACAACTCCTG
GAACCCGACC GCATCGTGCA GATCGAAAGC GACAGCTTCC CCGCTTTCGT CGCCACCGGC
GCGGACGTGG CTGACTCGGT GGTGGAGGAG CGCCGCGCCG CCACCGGCCT CGACGACCTC
GCCACCCTGA TCTACACCTC GGGCACCACC GGCCGTCCCA AAGGCTGCGA GCTCACCCAG
CGCAACCTGG CCTTCGACGT CATGAGCGTC AACAGCGGCC CCATGAAGGA CGTCTTCACC
ATGGAGGGGC GCTCCACCCT CCTGTTCCTC CCGCTGGCGC ACTCGCTGGC CCGCATCATC
CAGGTCGGCT GCGTGGAGAC GAAGACCGTC ATGGGCCACT TCCCCTCCAC CGGCCCGGAC
CTGCTGGACG CGCTCGCTTC GTTCCGCCCC ATGTTCCTGC TTGCCGTGCC CCGCGTGTTC
GAGAAGGTCT ACAACAAGGC TGAGCAGAAG GCCATCGCCA GTGGCAAGGG CGACATCTTC
CGGAAGGCCG CGGAGACCGC CATCGCCTAC AGCAAGGCGC TGGACACCGG GAAGGTGAGC
CTGGGGCTGC GTCTCAAGCG CGCCGTGTTC AGCCTGCTCG TCTACCGCAA GATCCTGGCT
GCGGTGGGCG GGCAGGCCAA GTACGCCGTC TCCGGTGGTT CCGCCCTGGG TGAGCGGCTC
GGCCACTTCT TCCGCGGGAT CGGCCTGACC GTCCTGGAAG GCTACGGTCT GACCGAGACG
TCCGCCCCCA CCACCGCGAA TGCCCCCGAC ACCAACAAGA TCGGCACGGT GGGCCGCCCC
ATCCCCGGCA CGTCGATCCG GATCGCCGAC GACGGGGAGA TCCTCGTCAA GGGCGACAAC
GTGATGCGCG GCTACTGGAA CAACCCGAAG GCGACGAAGG AGGCGTTCAC CGAGGACGGC
TGGTACCGCA GCGGCGACAT CGGCGAACTC GACGAGGAAG GCTTCCTGCG GATCACCGGG
CGGAAGAAGG AGATCATCGT CACCGCAGGC GGGAAGAACG TCGCCCCCGC GGTCATCGAG
GACCGGATCC GCAGCCACGC GATCGTCAGC CAGTGCATGG TCGTCGGCGA CAACCGCAAG
TTCGTCGCCG CGCTCATCAC CATCGACCCG GAAGCCTTCG AGTTCTGGAA GAAGCAGCAC
AACAAGACCG GCACCATCGC CGAGCTGGTG GACGACCCCG ACCTGCGGGC CACCGTGCAG
AAGGCGGTGG ACGACGGCAA CAAGGCGGTC TCCCGGGCCG AGTCGGTACG GAAGTTCGCC
ATCCTGCCGG TGGACTTCAG CGAGGCTGAA GGCCACATGA CCGCGTCGCT GAAACTCAAG
CGGCACGTCA TCGAAAAGCA GTTCAGCGCG GAGATCGAGG CGCTCTACGC CGAGTGA
|
|---|
| Protein sequence | MREYTTPAVK ELDPDTRLTD TVFTRAAQEP NAVMFRRLVD GAWRDVTCAE FHRDVMGVAK
ALIAAGINHG DRVALMSRTR YEWTVIDYAI WTIGGVTVPI FDTSSEEQVE WILRDSGSTL
AFVENDEHAE RVRAVSAQLL EPDRIVQIES DSFPAFVATG ADVADSVVEE RRAATGLDDL
ATLIYTSGTT GRPKGCELTQ RNLAFDVMSV NSGPMKDVFT MEGRSTLLFL PLAHSLARII
QVGCVETKTV MGHFPSTGPD LLDALASFRP MFLLAVPRVF EKVYNKAEQK AIASGKGDIF
RKAAETAIAY SKALDTGKVS LGLRLKRAVF SLLVYRKILA AVGGQAKYAV SGGSALGERL
GHFFRGIGLT VLEGYGLTET SAPTTANAPD TNKIGTVGRP IPGTSIRIAD DGEILVKGDN
VMRGYWNNPK ATKEAFTEDG WYRSGDIGEL DEEGFLRITG RKKEIIVTAG GKNVAPAVIE
DRIRSHAIVS QCMVVGDNRK FVAALITIDP EAFEFWKKQH NKTGTIAELV DDPDLRATVQ
KAVDDGNKAV SRAESVRKFA ILPVDFSEAE GHMTASLKLK RHVIEKQFSA EIEALYAE
|
|---|
| |