| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0867 |
|---|
| Symbol | |
|---|
| ID | 3579554 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 1023371 |
|---|
| End bp | 1024537 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637684560 |
|---|
| Product | sigma-70 factor |
|---|
| Protein accession | YP_288928 |
|---|
| Protein GI | 72161271 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.515579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACAAAAT TCAATCCCTC TACTCCGGGA AAACGCAGGC ACACTATAAG AGTGGTTTTT
CCGGTGTCAC CTAAGAGGGC GTCGTCGATG CGAGATACGG CGGCTGAGAT CGTGGAAAGG
AGAACGCCCG CTGGCCCCGC GGCCGCGGTG GAACGCAGTG GCGGTCCTCC TGTCGAGGCG
GTCGGGGGAG AACCGGAGTA CGTGGACCGC GACGATTTCG CGGAGCACCC CGAAACCCGC
ACCTCCTCGG GCGACATCGT CCACGCCTAT CTGCGAGAAA TCGGCCGAGT CCCCCTGCTC
ACGGCTGAAG AAGAAGTCGA ACTCGCCAAA GCCATCGAAA TCGGCCTCTA CGCCGAGCAG
AAACTGCGCG CCGCACGCAC CGGTCCGGTC CCCGCACAGT ACTCCCCTGA ATGGTTTGAG
GACCTCAACG AGCTCGTCCG CGAAGGAAAA CTCGCCAAAC GCCGCCTGAT TGAATCTAAC
CTGCGCCTGG TGGTGTCGGT CGCCAAGCGC TACCTGGGCC GCGGTCTGGC CCTGCTCGAC
CTGATCCAGG AGGGCAACCT GGGGCTCATC CGCGCGGTGG AGAAGTTCGA CTACACCCGC
GGATACAAGT TCTCCACCTA CGCCACCTGG TGGATCCGGC AGGCGATCAC CCGCGCCATC
GCGGACCAGG CCCGCACCAT CCGGGTCCCC GTGCACATGG TGGAGAGCAT CAACCGGCTG
GCCCGCACCC GCCGCCGCCT GCACCAGGAG CTCGGCCGAG AACCGACCTT GCACGAGCTC
TCCCGCGAAC TCAACGTCGA CCACGACCGG GTCGTGGAAA TCCACCGCGT CTCCCAGGAG
CCCATTTCCC TGCACACGCC GATCGGCGAG GAAGACTCCG CGTTCGGCGA CTTCATCGAG
GACACGGACG CAGTCCCGCC GGTGGAGGCC GCGGCGTTCG TCATGCTCCA GGACCAGTTG
GCTCAGGTCC TGGGCGGGCT TTCAGAACGG GAGCAGCGGG TGATCACGCT CCGTTTCGGG
TTGGAGGACG GAAAACCGCA CACTCTTGAA GAGGTGGGAC GGAAGTTCGG CGTGACCCGG
GAACGCATCC GGCAGATCGA GTCCAAGACG CTCGCGAAAC TCCGGCAGCC CTCCCGAGCG
CGCATCCTCC GCGACTACCT GGGATAA
|
|---|
| Protein sequence | MTKFNPSTPG KRRHTIRVVF PVSPKRASSM RDTAAEIVER RTPAGPAAAV ERSGGPPVEA
VGGEPEYVDR DDFAEHPETR TSSGDIVHAY LREIGRVPLL TAEEEVELAK AIEIGLYAEQ
KLRAARTGPV PAQYSPEWFE DLNELVREGK LAKRRLIESN LRLVVSVAKR YLGRGLALLD
LIQEGNLGLI RAVEKFDYTR GYKFSTYATW WIRQAITRAI ADQARTIRVP VHMVESINRL
ARTRRRLHQE LGREPTLHEL SRELNVDHDR VVEIHRVSQE PISLHTPIGE EDSAFGDFIE
DTDAVPPVEA AAFVMLQDQL AQVLGGLSER EQRVITLRFG LEDGKPHTLE EVGRKFGVTR
ERIRQIESKT LAKLRQPSRA RILRDYLG
|
|---|
| |