Gene Tfu_0850 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_0850 
Symbol 
ID3579632 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand
Start bp1004179 
End bp1005858 
Gene Length1680 bp 
Protein Length559 aa 
Translation table11 
GC content67% 
IMG OID637684543 
Product2-isopropylmalate synthase 
Protein accessionYP_288911 
Protein GI161723109 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0119] Isopropylmalate/homocitrate/citramalate synthases 
TIGRFAM ID[TIGR00970] 2-isopropylmalate synthase, yeast type 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.307379 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGTTCC ACCGCTACCA GCCGTTCAAG CCGGTCGACC TGCCTGACCG AACCTGGCCC 
TCGAAGACCA TCACCAAAGC TCCTCGCTGG CTCTCCACTG ACCTGCGCGA CGGCAACCAG
GCGCTGATCG AGCCCATGGA CACCGAGCGC AAGCGCGAGA TCTTCGACCT GCTGGTCCGC
ATGGGCTACA AGGAGATCGA GGTCGGTTTC CCCGCAGCCA GCCAGACCGA CTACGACTTC
GTGCGGTACC TGATCGAAGA GGACCGCATC CCCGACGACG TGCAGATCTC GGTGCTGACG
CAGGCACGCG AGGAGCTGAT TGAACGCACC GTCCAGAGCC TGGTCGGCGC CAAGCGGGCC
ACCGTCCACC TGTACAACGC GACGTCGCCG GAGTTCCGCC GCATCGTCTT CGGCGTGAAC
CGCGAAGAGT GCAAGGGCAT CGCGGTGGAA GGCACCCGCA CCGTCCTGAA GTTCGCCGAG
CAGTACCTCA AGGACACCGA GTACTTCGGC TACGAGTACT CGCCGGAGAT CTTCATCGAC
ACCGAGCTGG AGTTCGCACT CGAAGTGTGC GAAGCCGTCA TGGACGTCTA CCAGCCGGGT
CCGGACCGGG AGATCATCCT CAACCTGCCC GCCACGGTCG AGCGCGCCAC CCCGAACGTG
TACGCCGACC AGATCGAGTG GATGAGCCGC AACCTGTCCC GCCGCGAGTA CGTGTGCCTG
TCCGTGCACC CGCACAACGA CCGCGGCACC GCAGTGGCCG CCGCTGAGCT GGCGGTGATG
GCGGGCGCCG ACCGGGTCGA AGGCTGCCTG TTCGGCCACG GCGAGCGCAC CGGCAACGTA
TGCCTGGTGA CCCTGGGCCT GAACCTGTTC AGCCAGGGCA TCGACCCGAT GATCGACTTC
TCCAACATCG ACGAGATCCG CCGTACGGTC GAGCACTGCA CCCAACTGCC GGTCAACCCC
CGCCACCCCT ACGGCGGCGA CCTGGTGTAC ACCGCGTTCT CCGGCTCCCA CCAGGACGCC
ATCAAGAAGG GCTTCCACGC CCTGGAGGCC GACGCTGCTG CGGCGGGCGT CCCTGTGGAC
GAGTACCGGT GGAACATGCC GTACCTGCCC ATCGACCCCA AGGATGTGGG CCGCACCTAC
GAGGCGGTCA TCCGGGTCAA CAGCCAGTCC GGCAAGGGCG GGGTCTCCTA CGTCCTGCAG
CGCGACTACT CCATCGACCT GCCGCGCCGT CTGCAGATCG AGTTCTCCCG CGTGGTGCAG
CAGTTCGCTG ATGCCGAGGG CGGCGAGTTC AGCGGGGAGC GCATCTGGGA GATCTTCACC
GACACCTACC TGTCCGAGGG CGTGGTCGGG GTCATGGCGT ACCGCTCGGA GACGAGCGAG
GACGGCGAGT ACTGCATCAG CGCCGACGTC CGGCTGCGCG GCGAGATTCG TGAGATCACC
GGCACCGGCA ACGGCCCGAT CTCCGCGTTC GTGGACGCGC TGGCCGGTGT GGGCTTCAAG
CTGCGGGTCC TGGACTACAG CGAGCACGCG TTGAGCGAGG GCGGCGACGC CCGCGCCGCG
GCCTACGTCG AAGCCGAAGT CGACGGAAAC GTCCTGTGGG GTGTGGGGAT CAGCAGCAAC
ATCACGACAG CCTCGCTGAA GGCGGTGTGC AGCGCGGTCA ACCGGGCCCA GCAGAGCTGA
 
Protein sequence
MPFHRYQPFK PVDLPDRTWP SKTITKAPRW LSTDLRDGNQ ALIEPMDTER KREIFDLLVR 
MGYKEIEVGF PAASQTDYDF VRYLIEEDRI PDDVQISVLT QAREELIERT VQSLVGAKRA
TVHLYNATSP EFRRIVFGVN REECKGIAVE GTRTVLKFAE QYLKDTEYFG YEYSPEIFID
TELEFALEVC EAVMDVYQPG PDREIILNLP ATVERATPNV YADQIEWMSR NLSRREYVCL
SVHPHNDRGT AVAAAELAVM AGADRVEGCL FGHGERTGNV CLVTLGLNLF SQGIDPMIDF
SNIDEIRRTV EHCTQLPVNP RHPYGGDLVY TAFSGSHQDA IKKGFHALEA DAAAAGVPVD
EYRWNMPYLP IDPKDVGRTY EAVIRVNSQS GKGGVSYVLQ RDYSIDLPRR LQIEFSRVVQ
QFADAEGGEF SGERIWEIFT DTYLSEGVVG VMAYRSETSE DGEYCISADV RLRGEIREIT
GTGNGPISAF VDALAGVGFK LRVLDYSEHA LSEGGDARAA AYVEAEVDGN VLWGVGISSN
ITTASLKAVC SAVNRAQQS