Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_0850 |
Symbol | |
ID | 3579632 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | + |
Start bp | 1004179 |
End bp | 1005858 |
Gene Length | 1680 bp |
Protein Length | 559 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637684543 |
Product | 2-isopropylmalate synthase |
Protein accession | YP_288911 |
Protein GI | 161723109 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.307379 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGTTCC ACCGCTACCA GCCGTTCAAG CCGGTCGACC TGCCTGACCG AACCTGGCCC TCGAAGACCA TCACCAAAGC TCCTCGCTGG CTCTCCACTG ACCTGCGCGA CGGCAACCAG GCGCTGATCG AGCCCATGGA CACCGAGCGC AAGCGCGAGA TCTTCGACCT GCTGGTCCGC ATGGGCTACA AGGAGATCGA GGTCGGTTTC CCCGCAGCCA GCCAGACCGA CTACGACTTC GTGCGGTACC TGATCGAAGA GGACCGCATC CCCGACGACG TGCAGATCTC GGTGCTGACG CAGGCACGCG AGGAGCTGAT TGAACGCACC GTCCAGAGCC TGGTCGGCGC CAAGCGGGCC ACCGTCCACC TGTACAACGC GACGTCGCCG GAGTTCCGCC GCATCGTCTT CGGCGTGAAC CGCGAAGAGT GCAAGGGCAT CGCGGTGGAA GGCACCCGCA CCGTCCTGAA GTTCGCCGAG CAGTACCTCA AGGACACCGA GTACTTCGGC TACGAGTACT CGCCGGAGAT CTTCATCGAC ACCGAGCTGG AGTTCGCACT CGAAGTGTGC GAAGCCGTCA TGGACGTCTA CCAGCCGGGT CCGGACCGGG AGATCATCCT CAACCTGCCC GCCACGGTCG AGCGCGCCAC CCCGAACGTG TACGCCGACC AGATCGAGTG GATGAGCCGC AACCTGTCCC GCCGCGAGTA CGTGTGCCTG TCCGTGCACC CGCACAACGA CCGCGGCACC GCAGTGGCCG CCGCTGAGCT GGCGGTGATG GCGGGCGCCG ACCGGGTCGA AGGCTGCCTG TTCGGCCACG GCGAGCGCAC CGGCAACGTA TGCCTGGTGA CCCTGGGCCT GAACCTGTTC AGCCAGGGCA TCGACCCGAT GATCGACTTC TCCAACATCG ACGAGATCCG CCGTACGGTC GAGCACTGCA CCCAACTGCC GGTCAACCCC CGCCACCCCT ACGGCGGCGA CCTGGTGTAC ACCGCGTTCT CCGGCTCCCA CCAGGACGCC ATCAAGAAGG GCTTCCACGC CCTGGAGGCC GACGCTGCTG CGGCGGGCGT CCCTGTGGAC GAGTACCGGT GGAACATGCC GTACCTGCCC ATCGACCCCA AGGATGTGGG CCGCACCTAC GAGGCGGTCA TCCGGGTCAA CAGCCAGTCC GGCAAGGGCG GGGTCTCCTA CGTCCTGCAG CGCGACTACT CCATCGACCT GCCGCGCCGT CTGCAGATCG AGTTCTCCCG CGTGGTGCAG CAGTTCGCTG ATGCCGAGGG CGGCGAGTTC AGCGGGGAGC GCATCTGGGA GATCTTCACC GACACCTACC TGTCCGAGGG CGTGGTCGGG GTCATGGCGT ACCGCTCGGA GACGAGCGAG GACGGCGAGT ACTGCATCAG CGCCGACGTC CGGCTGCGCG GCGAGATTCG TGAGATCACC GGCACCGGCA ACGGCCCGAT CTCCGCGTTC GTGGACGCGC TGGCCGGTGT GGGCTTCAAG CTGCGGGTCC TGGACTACAG CGAGCACGCG TTGAGCGAGG GCGGCGACGC CCGCGCCGCG GCCTACGTCG AAGCCGAAGT CGACGGAAAC GTCCTGTGGG GTGTGGGGAT CAGCAGCAAC ATCACGACAG CCTCGCTGAA GGCGGTGTGC AGCGCGGTCA ACCGGGCCCA GCAGAGCTGA
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Protein sequence | MPFHRYQPFK PVDLPDRTWP SKTITKAPRW LSTDLRDGNQ ALIEPMDTER KREIFDLLVR MGYKEIEVGF PAASQTDYDF VRYLIEEDRI PDDVQISVLT QAREELIERT VQSLVGAKRA TVHLYNATSP EFRRIVFGVN REECKGIAVE GTRTVLKFAE QYLKDTEYFG YEYSPEIFID TELEFALEVC EAVMDVYQPG PDREIILNLP ATVERATPNV YADQIEWMSR NLSRREYVCL SVHPHNDRGT AVAAAELAVM AGADRVEGCL FGHGERTGNV CLVTLGLNLF SQGIDPMIDF SNIDEIRRTV EHCTQLPVNP RHPYGGDLVY TAFSGSHQDA IKKGFHALEA DAAAAGVPVD EYRWNMPYLP IDPKDVGRTY EAVIRVNSQS GKGGVSYVLQ RDYSIDLPRR LQIEFSRVVQ QFADAEGGEF SGERIWEIFT DTYLSEGVVG VMAYRSETSE DGEYCISADV RLRGEIREIT GTGNGPISAF VDALAGVGFK LRVLDYSEHA LSEGGDARAA AYVEAEVDGN VLWGVGISSN ITTASLKAVC SAVNRAQQS
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