| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0792 |
|---|
| Symbol | |
|---|
| ID | 3579863 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 935665 |
|---|
| End bp | 937350 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637684485 |
|---|
| Product | metallo-beta-lactamase family hydrolase |
|---|
| Protein accession | YP_288853 |
|---|
| Protein GI | 72161196 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0595] Predicted hydrolase of the metallo-beta-lactamase superfamily |
|---|
| TIGRFAM ID | [TIGR00649] conserved hypothetical protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.135441 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCACC CGCACCCCGA GCTCGGGCCC CCGCCGCCAC TGCCCCGCAA CACCCTGCGG
ATCATCCCCT TGGGCGGGCT GGGTGAGATC GGCCGCAACA TGGCCGTCCT CGAATACGAG
GGGAAAATGC TCATCATCGA CTGCGGTGTG CTCTTTCCCG CGGAAGAGCA GCCCGGAGTC
GACCTGATCC TCCCCGACTT CGAATACCTG CGGGGGCGCC TCGACGACGT CGAGGCGATC
GTGCTCACGC ACGGCCACGA AGACCACATT GGCGGCGTCC CCTTCCTGCT GCGGGAACGC
ACCGATATCC CGCTGGTAGG CTCCCGCCTC ACCCTGGCCC TGCTCACCGC CAAACTCGGG
GAACACCGCA TCAAACCGAC CCTGATCCAG GTCGCCGAAG GCGAACAGCA CACCTTCGGC
TCCTTCAACC TCGAGTTCTT CGCGGTCAAC CACTCCATCC CGGATGCGCT CGCGGTCGGT
GTGCGCACCC CGGCCGGCAA CGTGCTGCAC ACCGGCGACT TCAAAATGGA CCAGTTGCCG
CTGGACAACC GCATCACCGA CCTCGGCGGG TTCGCGCGGT TCGGCGCGGA AGGCGTCGAC
CTGCTGATGT CGGACTCCAC CAACGCGGAA GTCCCCGGCT TCGTCACCAG CGAACGCGAC
ATCGCCGGCG TCCTCGACAC GGTCTTCGCG AAAGCCGAGA AGCGCATCAT CGTCGCCTGT
TTTGCGTCCC ACATCCACCG GGTCCAGCAG GTCCTCGACG CGTCCCAGGC CCACGGCCGC
AAAGTCGCCT TCGTGGGCCG CACCATGATC CGCAACATGA ACATCGCCCG GGAGCTCGGC
TACCTCAAAG TCCCCGGCGA CCTGCTCGTG GACGCGCGCG ACCTCGAGGC GCTGCCCTCC
GACGAAGTCG TCCTGGTGTG CACCGGCTCC CAGGGCGAGC CCATGGCCGC CCTGAGCCGC
ATGGCCAACC GGGACCACCA GATCCACATC GAACCCGGGG ACACGGTCAT CCTGGCTTCC
TCGCTCATCC CCGGAAACGA GAACTCCGTC AACCGGGTCA TCAACGGCCT GACCCGCTGG
GGCGCCAAAG TCGTCCACAA GGGCAACGCC CTGGTCCACG TCTCCGGGCA CGCACCCGCG
GGAGAGCTGC TGTACGTGCT CAACATGGTG CGGCCGCGGA ACTTCATGCC GATCCACGGG
GAATGGCGGC ACCTGCGCGC CCATGCCCAG CTCGCCATGC TCAGCGGGAT CCCCGAGGAC
CGGGTCGTCA TCGCCGAGGA CGGCGTCGTC GTCGACCTCC ACGACGGCAA GGCCCGCATC
AGCGGCGTGG TCCAGGCCGG CTACGTGTAC GTGGACGGCA CCTCGGTCGG CGACGTCACC
GAGGCCGCGC TCAAGGACCG CCGCATCCTC GGGGAGGAAG GCTTCATCTC CGTGGTCATC
GTGGTGGAGT CCACCACCGG CAAACTCATC GGGGAACCGC AGATCCACAC CCGGGGCGCG
GGGATCGACC TGGAAGCCTA CGACGACGTC ATCCCCAAGA TCCAAGAAGT CTTGGAGCAG
GCCGCAGCCG AGGGTGTCAA CGACCCGGCG CAACTCCGGC AACTGGTCCG GCGCAGCATC
GGCCGGTGGG TCAACGAAAG CTACCGGCGA CGGCCCATGC TGGTCCCCGT CGTCATCGAG
ATCTGA
|
|---|
| Protein sequence | MSHPHPELGP PPPLPRNTLR IIPLGGLGEI GRNMAVLEYE GKMLIIDCGV LFPAEEQPGV
DLILPDFEYL RGRLDDVEAI VLTHGHEDHI GGVPFLLRER TDIPLVGSRL TLALLTAKLG
EHRIKPTLIQ VAEGEQHTFG SFNLEFFAVN HSIPDALAVG VRTPAGNVLH TGDFKMDQLP
LDNRITDLGG FARFGAEGVD LLMSDSTNAE VPGFVTSERD IAGVLDTVFA KAEKRIIVAC
FASHIHRVQQ VLDASQAHGR KVAFVGRTMI RNMNIARELG YLKVPGDLLV DARDLEALPS
DEVVLVCTGS QGEPMAALSR MANRDHQIHI EPGDTVILAS SLIPGNENSV NRVINGLTRW
GAKVVHKGNA LVHVSGHAPA GELLYVLNMV RPRNFMPIHG EWRHLRAHAQ LAMLSGIPED
RVVIAEDGVV VDLHDGKARI SGVVQAGYVY VDGTSVGDVT EAALKDRRIL GEEGFISVVI
VVESTTGKLI GEPQIHTRGA GIDLEAYDDV IPKIQEVLEQ AAAEGVNDPA QLRQLVRRSI
GRWVNESYRR RPMLVPVVIE I
|
|---|
| |